Name: Lacinutrix mariniflava KCCM 42306
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134366

Type strain:

Species: Lacinutrix mariniflava

Culture col. no.: KCCM 42306, JCM 13824, AKS 432

Strain history: K. K. Kwon AKS432.

NCBI tax ID(s): 342955 (species)

Section

Lacinutrix mariniflava KCCM 42306 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from red alga.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lacinutrix*
	Species	**Lacinutrix mariniflava**
	Full Scientific Name (LPSN)	Lacinutrix mariniflava Nedashkovskaya et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32625]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.964

[Ref.: #32625]	Cell length	1.1-2.5 µm

[Ref.: #32625]	Cell width	0.6-0.8 µm

[Ref.: #32625]	Cell shape	rod-shaped

[Ref.: #32625]	Motility	no

[Ref.: #32625]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32625]	growth	0-22 °C
[Ref.: #32625]	optimum	17.5 °C
[Ref.: #67770]	growth	17 °C

[Ref.: #32625]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #32625]			optimum	6.5
[Ref.: #32625]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32625]

Oxygen tolerance

aerobe

[Ref.: #32625]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32625]		NaCl		growth	0.5-4.5	%
[Ref.: #32625]		NaCl		optimum	2.5	%

[Ref.: #32625]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32625]	aspartate ChEBI	+	carbon source
[Ref.: #32625]	dextrin ChEBI	+	carbon source
[Ref.: #32625]	esculin ChEBI	+	hydrolysis
[Ref.: #32625]	galactose ChEBI	+	carbon source
[Ref.: #32625]	glucose ChEBI	+	carbon source
[Ref.: #32625]	glutamate ChEBI	+	carbon source
[Ref.: #32625]	glycogen ChEBI	+	carbon source
[Ref.: #32625]	maltose ChEBI	+	carbon source
[Ref.: #32625]	mannitol ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32625]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32625]	catalase	+	1.11.1.6
[Ref.: #32625]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32625]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32625]	Sample type/isolated from	red alga

[Ref.: #67770]	Sample type/isolated from	Marine red alga at Marian Cove
[Ref.: #67770]	Geographic location (country and/or sea, region)	King George Island, South Shetland Islands
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ167239 (>99% sequence identity) for Lacinutrix from Microbeatlas

Aquatic Samples	638
Soil Samples	84
Animal Samples	48
Plant Samples
Total Samples	770

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32625]	Lacinutrix mariniflava strain AKS432 16S ribosomal RNA gene, partial sequence	DQ167239	1454	GenBank	342955 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lacinutrix mariniflava strain AKS432	342955.4	wgs	PATRIC	342955 tax ID	*
[Ref.: #66792]	Lacinutrix sp. JCM 13824	2731957952	draft	JGI IMG/M	342955 tax ID	*

[Ref.: #32625]	GC-content	34.7 mol%
[Ref.: #67770]	GC-content	34.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lacinutrix mariniflava strain AKS432 PATRIC: 342955.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lacinutrix mariniflava strain AKS432 PATRIC: 342955.4
[Ref.: #69480]	gram-positive	no	97.769	yes
[Ref.: #69480]	anaerobic	no	99.522	yes
[Ref.: #69480]	halophile	no	71.374	no
[Ref.: #69480]	spore-forming	no	96.246	yes
[Ref.: #69480]	glucose-util	yes	86.316	no
[Ref.: #69480]	motile	no	87.35	no
[Ref.: #69480]	flagellated	no	93.332	yes
[Ref.: #69480]	thermophile	no	99.627	yes
[Ref.: #69480]	aerobic	yes	93.086	yes
[Ref.: #69480]	glucose-ferment	no	89.887	no

Availability in culture collections External links

[Ref.: #32625]

Culture collection no.

KCCM 42306, JCM 13824, AKS 432

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacinutrix gracilariae sp. nov., isolated from the surface of a marine red alga Gracilaria sp.	Huang Z, Li G, Lai Q, Gu L, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000755	2015	*
Phylogeny	Lacinutrix jangbogonensis sp. nov., a psychrophilic bacterium isolated from Antarctic marine sediment and emended description of the genus Lacinutrix.	Lee YM, Hwang CY, Lee I, Jung YJ, Cho Y, Baek K, Hong SG, Kim JH, Chun J, Lee HK	Antonie Van Leeuwenhoek	10.1007/s10482-014-0221-5	2014	*
Phylogeny	Lacinutrix algicola sp. nov. and Lacinutrix mariniflava sp. nov., two novel marine alga-associated bacteria and emended description of the genus Lacinutrix.	Nedashkovskaya OI, Kwon KK, Yang SH, Lee HS, Chung KH, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65799-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32625

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28836 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28836

IJSEM 26894 2008 ( DOI 10.1099/ijs.0.65799-0 , PubMed 19060042 )

* These data were automatically processed and therefore are not curated

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Lacinutrix mariniflava strain AKS432

Lacinutrix mariniflava strain AKS432

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