Name: Roseibacillus ponti YM27-120
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134328

Type strain:

Species: Roseibacillus ponti

Strain Designation: YM27-120

Culture col. no.: MBIC 08316, KCTC 12987

Strain history: <- JW Yoon, Tokoy Univ., Japan

NCBI tax ID(s): 454147 (species)

Section

Roseibacillus ponti YM27-120 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Brown alga.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiae*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Roseibacillus*
	Species	**Roseibacillus ponti**
	Full Scientific Name (PNU)	Roseibacillus ponti Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32455]	Gram stain	negative
[Ref.: #32455]	Cell length	1.35 µm
[Ref.: #32455]	Cell width	0.75 µm
[Ref.: #32455]	Cell shape	rod-shaped
[Ref.: #32455]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Motility	no

[Ref.: #32455]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32455]	growth	15-37 °C
[Ref.: #32455]	optimum	33.5 °C
[Ref.: #67771]	growth	30-37 °C

[Ref.: #32455]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #32455]			growth	07-09	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32455]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32455]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32455]		NaCl		growth	<7	%

[Ref.: #67771]

Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32455]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #32455]	arabinose ChEBI	+	carbon source
[Ref.: #32455]	dextrin ChEBI	+	carbon source
[Ref.: #32455]	DL-carnitine ChEBI	+	carbon source
[Ref.: #32455]	fructose ChEBI	+	carbon source
[Ref.: #32455]	galactose ChEBI	+	carbon source
[Ref.: #32455]	galacturonate ChEBI	+	carbon source
[Ref.: #32455]	glucose ChEBI	+	carbon source
[Ref.: #32455]	glycerol ChEBI	+	carbon source
[Ref.: #32455]	lactose ChEBI	+	carbon source
[Ref.: #32455]	mannitol ChEBI	+	carbon source
[Ref.: #32455]	mannose ChEBI	+	carbon source
[Ref.: #32455]	thymidine ChEBI	+	carbon source
[Ref.: #32455]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32455]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32455]	catalase	+	1.11.1.6
[Ref.: #32455]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32455]	Sample type/isolated from	Brown alga

[Ref.: #67771]	Sample type/isolated from	From brown alga, `Padina` sp.
[Ref.: #67771]	Geographic location (country and/or sea, region)	shore of Futatsugame, Washizaki, Sado, Niigata
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Brown Algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB331889 (>99% sequence identity) for Roseibacillus ponti from Microbeatlas

Aquatic Samples	330
Soil Samples	3
Animal Samples	4
Plant Samples
Total Samples	337

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32455]	Roseibacillus ponti gene for 16S rRNA, partial sequence, strain: YM27-120	AB331889	1453	GenBank	454147 tax ID

[Ref.: #32455]

GC-content

57.6 mol%

Availability in culture collections External links

[Ref.: #32455]

Culture collection no.

MBIC 08316, KCTC 12987

[Ref.: #20218]

Associated Passport(s) in StrainInfo

802444

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.	Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65520-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32455

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28677 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28677

IJSEM 998 2008 ( DOI 10.1099/ijs.0.65520-0 , PubMed 18398209 )

* These data were automatically processed and therefore are not curated

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