Strain identifier

BacDive ID: 134328

Type strain: Yes

Species: Roseibacillus ponti

Strain Designation: YM27-120

Strain history: <- JW Yoon, Tokoy Univ., Japan

NCBI tax ID(s): 454147 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 32455

BacDive-ID: 134328

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Roseibacillus ponti YM27-120 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Brown alga.

NCBI tax id

  • NCBI tax id: 454147
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JW Yoon, Tokoy Univ., Japan

doi: 10.13145/bacdive134328.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/verrucomicrobiota
  • domain: Bacteria
  • phylum: Verrucomicrobiota
  • class: Verrucomicrobiia
  • order: Verrucomicrobiales
  • family: Verrucomicrobiaceae
  • genus: Roseibacillus
  • species: Roseibacillus ponti
  • full scientific name: Roseibacillus ponti Yoon et al. 2008

@ref: 32455

domain: Bacteria

phylum: Verrucomicrobia

class: Verrucomicrobiae

order: Verrucomicrobiales

family: Verrucomicrobiaceae

genus: Roseibacillus

species: Roseibacillus ponti

strain designation: YM27-120

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32455negative1.35 µm0.75 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 32455
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32455positivegrowth15-37
32455positiveoptimum33.5mesophilic
67771positivegrowth30-37mesophilic

culture pH

  • @ref: 32455
  • ability: positive
  • type: growth
  • pH: 07-09
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32455aerobe
67771aerobe

spore formation

  • @ref: 32455
  • spore formation: no

halophily

  • @ref: 32455
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <7 %

observation

  • @ref: 67771
  • observation: quinones: MK-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32455620642,3-butanediol+carbon source
3245522599arabinose+carbon source
3245517126DL-carnitine+carbon source
3245523652dextrin+carbon source
3245528757fructose+carbon source
3245528260galactose+carbon source
3245524175galacturonate+carbon source
3245517234glucose+carbon source
3245517754glycerol+carbon source
3245517716lactose+carbon source
3245529864mannitol+carbon source
3245537684mannose+carbon source
3245517748thymidine+carbon source
3245516704uridine+carbon source

enzymes

@refvalueactivityec
32455alkaline phosphatase+3.1.3.1
32455catalase+1.11.1.6
32455cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
32455Brown alga
67771From brown alga, `Padina` sp.shore of Futatsugame, Washizaki, Sado, NiigataJapanJPNAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae
  • Cat3: #Brown Algae

taxonmaps

  • @ref: 69479
  • File name: preview.99_92132.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_884;96_4257;97_5200;98_63438;99_92132&stattab=map
  • Last taxonomy: Roseibacillus ponti
  • 16S sequence: AB331889
  • Sequence Identity:
  • Total samples: 337
  • soil counts: 3
  • aquatic counts: 330
  • animal counts: 4

Sequence information

16S sequences

  • @ref: 32455
  • description: Roseibacillus ponti gene for 16S rRNA, partial sequence, strain: YM27-120
  • accession: AB331889
  • length: 1453
  • database: nuccore
  • NCBI tax ID: 454147

GC content

  • @ref: 32455
  • GC-content: 57.6

External links

@ref: 32455

culture collection no.: MBIC 08316, KCTC 12987

literature

  • topic: Phylogeny
  • Pubmed-ID: 18398209
  • title: Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.
  • authors: Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65520-0
  • year: 2008
  • mesh: Base Composition, Carotenoids/biosynthesis, DNA, Bacterial/chemistry/genetics, Fatty Acids/metabolism, Genes, Bacterial, Gram-Negative Bacteria/*classification/genetics/*isolation & purification/metabolism, Marine Biology, Microscopy, Electron, Transmission, Molecular Sequence Data, Peptidoglycan/metabolism, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as Topic
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32455Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172867728776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/