Name: Roseibacillus ishigakijimensis MN1-741
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134327

Type strain:

Species: Roseibacillus ishigakijimensis

Strain Designation: MN1-741

Culture col. no.: MBIC 08315, KCTC 12986, NBRC 103926

Strain history: <- JW Yoon, Tokoy Univ., Japan

NCBI tax ID(s): 454146 (species)

Section

Roseibacillus ishigakijimensis MN1-741 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Roseibacillus*
	Species	**Roseibacillus ishigakijimensis**
	Full Scientific Name (LPSN)	Roseibacillus ishigakijimensis Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32455]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #32455]	Cell length	1.25 µm

[Ref.: #32455]	Cell width	0.75 µm

[Ref.: #32455]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32455]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #32455]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32455]	growth	20-37 °C
[Ref.: #32455]	optimum	33.5 °C
[Ref.: #67771]	growth	30-37 °C

[Ref.: #32455]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32455]			optimum	7.75
[Ref.: #32455]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32455]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32455]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32455]		NaCl		growth	<6	%

[Ref.: #67771]

Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32455]	arabinose ChEBI	+	carbon source
[Ref.: #32455]	glucose ChEBI	+	carbon source
[Ref.: #32455]	lactate ChEBI	+	carbon source
[Ref.: #32455]	maltose ChEBI	+	carbon source
[Ref.: #32455]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32455]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32455]	catalase	+	1.11.1.6
[Ref.: #32455]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32455]	Sample type/isolated from	seawater

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	coral reef area in Yonehara, Ishigakijima(an island in Okinawa)
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB331888 (>99% sequence identity) for Roseibacillus ishigakijimensis subclade from Microbeatlas

Aquatic Samples	1196
Soil Samples	4
Animal Samples	43
Plant Samples
Total Samples	1243

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32455]	Roseibacillus ishigakijimensis gene for 16S rRNA, partial sequence, strain: MN1-741	AB331888	1458	GenBank	454146 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseibacillus ishigakijimensis KCTC 12986	GCA_016595415	contig	GenBank	454146 tax ID	*
[Ref.: #66792]	Roseibacillus ishigakijimensis strain KCTC 12986	454146.3	wgs	PATRIC	454146 tax ID	*

[Ref.: #32455]

GC-content

61.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseibacillus ishigakijimensis strain KCTC 12986 PATRIC: 454146.3
[Ref.: #69481]	spore-forming	no	50	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseibacillus ishigakijimensis strain KCTC 12986 PATRIC: 454146.3
[Ref.: #69480]	gram-positive	no	96.785	no
[Ref.: #69480]	anaerobic	no	99.063	yes
[Ref.: #69480]	halophile	yes	67.562	yes
[Ref.: #69480]	spore-forming	no	97.192	yes
[Ref.: #69480]	glucose-util	yes	86.909	yes
[Ref.: #69480]	aerobic	yes	88.973	yes
[Ref.: #69480]	thermophile	no	95.958	no
[Ref.: #69480]	flagellated	no	97.232	yes
[Ref.: #69480]	motile	no	92.458	yes
[Ref.: #69480]	glucose-ferment	no	84.436	no

Availability in culture collections External links

[Ref.: #32455]

Culture collection no.

MBIC 08315, KCTC 12986, NBRC 103926

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.	Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65520-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32455

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28677 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28677

IJSEM 998 2008 ( DOI 10.1099/ijs.0.65520-0 , PubMed 18398209 )

* These data were automatically processed and therefore are not curated

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Roseibacillus ishigakijimensis strain KCTC 12986

Roseibacillus ishigakijimensis strain KCTC 12986

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