Roseibacillus ishigakijimensis (MBIC 08315, KCTC 12986, MN1-741)

Name: Roseibacillus ishigakijimensis (MBIC 08315, KCTC 12986, MN1-741)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134327

Type strain

Strain Designation MN1-741

Culture col. no. MBIC 08315 KCTC 12986 MN1-741 NBRC 103926

NCBI tax ID(s) 454146

Special Collections KCTC Literature strains

Links

Roseibacillus ishigakijimensis MN1-741 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 26302

KCTC 12986,NBRC 103926

@ref 20215

Last LPSN update 2025-12-16 10:02:01

Domain Pseudomonadati

Phylum Verrucomicrobiota

Class Verrucomicrobiia

Order Verrucomicrobiales

Family Verrucomicrobiaceae

Genus Roseibacillus

Species Roseibacillus ishigakijimensis

Full scientific name Roseibacillus ishigakijimensis Yoon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32455	negative	1.25 µm	0.75 µm	rod-shaped
67771				rod-shaped
67771	negative
125438	negative

Pigmentation

32455

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32455	positive	growth	20-37
32455	positive	optimum	33.5
67771	positive	growth	30-37

Culture pH

@ref	Ability	Type	PH
32455	positive	optimum	7.75
32455	positive	growth	6.5-9

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32455	aerobe
67771	aerobe

Spore formation

32455

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32455	NaCl	positive	growth	<6 %

Observation

67771

Observationquinones: MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32455	22599 ChEBI	arabinose	+	carbon source
32455	17234 ChEBI	glucose	+	carbon source
32455	24996 ChEBI	lactate	+	carbon source
32455	17306 ChEBI	maltose	+	carbon source
32455	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32455	alkaline phosphatase	+	3.1.3.1
32455	catalase	+	1.11.1.6
32455	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type
32455	seawater
67771	From seawater

Taxonmaps

69479

Global distribution of 16S sequence AB331888 (>99% sequence identity) for Roseibacillus ishigakijimensis subclade from Microbeatlas

Aquatic Samples	1196
Soil Samples	4
Animal Samples	43
Plant Samples
Total Samples	1243

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268318v1 assembly for Roseibacillus ishigakijimensis KCTC 12986	scaffold	GCA_042683185	454146	60.04
66792	ASM1659541v1 assembly for Roseibacillus ishigakijimensis KCTC 12986	contig	GCA_016595415	454146	37.89

Genome browser: GCA_042683185

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32455	Roseibacillus ishigakijimensis gene for 16S rRNA, partial sequence, strain: MN1-741	AB331888	1458		454146

GC content

32455

GC-content (mol%)61.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Roseibacillus ishigakijimensis KCTC 12986
NCBI: GCA_016595415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	69.90	no
125439	motility	BacteriaNetⓘ	no	73.60	no
125439	gram_stain	BacteriaNetⓘ	negative	89.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseibacillus ishigakijimensis strain KCTC 12986
PATRIC: 454146.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.50	yes
125438	anaerobic	anaerobicⓘ	no	91.98	yes
125438	spore-forming	spore-formingⓘ	no	89.90	no
125438	aerobic	aerobicⓘ	yes	78.02	yes
125438	thermophilic	thermophileⓘ	no	92.13	yes
125438	flagellated	motile2+ⓘ	no	81.81	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum 'Verrucomicrobia', and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae.	Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65520-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32455	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28677 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseibacillus ishigakijimensis (MBIC 08315, KCTC 12986, MN1-741)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042683185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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