Name: Microbulbifer halophilus CCTCC AB 206094
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134326

Type strain:

Species: Microbulbifer halophilus

Culture col. no.: CCTCC AB 206094, KCTC 12848, YIM 91118

NCBI tax ID(s): 453963 (species)

Special Collections

Section

Microbulbifer halophilus CCTCC AB 206094 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Microbulbiferaceae*
	Genus	*Microbulbifer*
	Species	**Microbulbifer halophilus**
	Full Scientific Name (LPSN)	Microbulbifer halophilus Tang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32454]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #32454]	Cell length	1.3-1.5 µm

[Ref.: #32454]	Cell width	0.3-0.5 µm

[Ref.: #32454]	Cell shape	rod-shaped

[Ref.: #32454]	Motility	yes

[Ref.: #32454]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32454]			growth	10-45 °C
[Ref.: #32454]			optimum	37 °C

	pH	Kind of pH		pH
[Ref.: #32454]			optimum	07-08
[Ref.: #32454]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32454]

Oxygen tolerance

aerobe

[Ref.: #32454]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %92.655

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32454]		NaCl		growth	01-20	%
[Ref.: #32454]		NaCl		optimum	10	%

[Ref.: #32454]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32454]	arabinose ChEBI	+	carbon source
[Ref.: #32454]	fucose ChEBI	+	carbon source
[Ref.: #32454]	glucose ChEBI	+	carbon source
[Ref.: #32454]	glycogen ChEBI	+	carbon source
[Ref.: #32454]	lactose ChEBI	+	carbon source
[Ref.: #32454]	maltose ChEBI	+	carbon source
[Ref.: #32454]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32454]	rhamnose ChEBI	+	carbon source
[Ref.: #32454]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32454]		catalase	+	1.11.1.6
[Ref.: #32454]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32454]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF674853 (>99% sequence identity) for Microbulbifer halophilus subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	4
Animal Samples
Plant Samples
Total Samples	6

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32454]	Microbulbifer halophilus strain YIM 91118 16S ribosomal RNA gene, partial sequence	EF674853	1473	GenBank ENA	453963 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbulbifer halophilus KCTC 12848	GCA_026183675	scaffold	GenBank ENA	453963 tax ID	*

[Ref.: #32454]

GC-content

63.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbulbifer halophilus KCTC 12848 NCBI: GCA_026183675.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.226	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.034	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.655	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.861	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	63.468	no

Availability in culture collections External links

[Ref.: #32454]

Culture collection no.

CCTCC AB 206094, KCTC 12848, YIM 91118

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbulbifer halophilus sp. nov., a moderately halophilic bacterium from north-west China.	Tang SK, Wang Y, Cai M, Lou K, Mao PH, Jin X, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65519-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32454

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28676 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#28676

IJSEM 2036 2008 ( DOI 10.1099/ijs.0.65519-0 , PubMed 18768600 )

* These data were automatically processed and therefore are not curated

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Microbulbifer halophilus KCTC 12848

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