Halolactibacillus alkaliphilus (CGMCC AS1.6843, NBRC 103919, H-5)

Name: Halolactibacillus alkaliphilus (CGMCC AS1.6843, NBRC 103919, H-5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134325

Type strain

Strain Designation H-5

Culture col. no. CGMCC AS1.6843 NBRC 103919 H-5

NCBI tax ID(s) 442899

Special Collections Literature strains

Links

Halolactibacillus alkaliphilus H-5 is a facultative anaerobe, Gram-positive, rod-shaped prokaryote that was isolated from soda lake.

Gram-positive rod-shaped facultative anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393840

NBRC 103919

@ref 20215

Last LPSN update 2025-12-16 10:02:01

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Halolactibacillus

Species Halolactibacillus alkaliphilus

Full scientific name Halolactibacillus alkaliphilus Cao et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32446	positive	3.5-4.7 µm	0.5-0.9 µm	rod-shaped
125439

Pigmentation

32446

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32446	positive	growth	15-45
32446	positive	optimum	28

Culture pH

@ref	Ability	Type	PH
32446	positive	optimum	12
32446	positive	growth	7.5-13

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32446	facultative anaerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation
32446
125439

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32446	NaCl	positive	growth	0.5-30 %
32446	NaCl	positive	optimum	2.5 %

Observation

32446

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32446	17754 ChEBI	glycerol	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

Isolation

32446

Sample typesoda lake

Taxonmaps

69479

Global distribution of 16S sequence EF554593 (>99% sequence identity) for Halolactibacillus alkaliphilus from Microbeatlas

Aquatic Samples	37
Soil Samples	3
Animal Samples	4
Plant Samples	2
Total Samples	46

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM799135v1 assembly for Halolactibacillus alkaliphilus NBRC 103919	contig	GCA_007991355	442899.5	442899	54

Genome browser: GCA_007991355

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32446	Halolactibacillus alkaliphilus strain H-5 16S ribosomal RNA gene, partial sequence	EF554593	1452		442899
124043	Halolactibacillus alkaliphilus gene for 16S rRNA, partial sequence, strain: NBRC 103919.	AB682143	1490		442899

GC content

32446

GC-content (mol%)38.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halolactibacillus alkaliphilus NBRC 103919
NCBI: GCA_007991355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	93.00	no
125439	motility	BacteriaNetⓘ	yes	90.20	no
125439	gram_stain	BacteriaNetⓘ	variable	80.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halolactibacillus alkaliphilus strain NBRC 103919
PATRIC: 442899.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.74	yes
125438	anaerobic	anaerobicⓘ	no	84.44	yes
125438	spore-forming	spore-formingⓘ	yes	54.62	no
125438	aerobic	aerobicⓘ	no	93.87	yes
125438	thermophilic	thermophileⓘ	no	89.05	no
125438	flagellated	motile2+ⓘ	yes	86.93	no

Literature

Title	Authors	Journal	DOI	Year
Antibacterial Activity of Red Pigment Produced by Halolactibacillus alkaliphilus MSRD1--an Isolate from Seaweed.	Suresh M, Renugadevi B, Brammavidhya S, Iyapparaj P, Anantharaman P.	Appl Biochem Biotechnol	10.1007/s12010-015-1566-6	2015
Microbial insights of enhanced anaerobic conversion of syngas into volatile fatty acids by co-fermentation with carbohydrate-rich synthetic wastewater.	Liu C, Wang W, O-Thong S, Yang Z, Zhang S, Liu G, Luo G.	Biotechnol Biofuels	10.1186/s13068-020-01694-z	2020
Halolactibacillus alkaliphilus sp. nov., a moderately alkaliphilic and halophilic bacterium isolated from a soda lake in Inner Mongolia, China, and emended description of the genus Halolactibacillus.	Cao SJ, Qu JH, Yang JS, Sun Q, Yuan HL	Int J Syst Evol Microbiol	10.1099/ijs.0.65511-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32446	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28668 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halolactibacillus alkaliphilus (CGMCC AS1.6843, NBRC 103919, H-5)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007991355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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