Name: Halolactibacillus alkaliphilus H-5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134325

Type strain:

Species: Halolactibacillus alkaliphilus

Strain Designation: H-5

Culture col. no.: CGMCC AS1.6843, NBRC 103919

NCBI tax ID(s): 442899 (species)

Special Collections

Literature strains

Section

Halolactibacillus alkaliphilus H-5 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from soda lake.

Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Halolactibacillus*
	Species	**Halolactibacillus alkaliphilus**
	Full Scientific Name (LPSN)	Halolactibacillus alkaliphilus Cao et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32446]	Gram stain	positive

[Ref.: #32446]	Cell length	3.5-4.7 µm

[Ref.: #32446]	Cell width	0.5-0.9 µm

[Ref.: #32446]	Cell shape	rod-shaped

[Ref.: #32446]	Motility	no

[Ref.: #32446]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #32446]			growth	15-45 °C
[Ref.: #32446]			optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #32446]			optimum	12
[Ref.: #32446]			growth	7.5-13

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32446]

Oxygen tolerance

facultative anaerobe

[Ref.: #32446]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %92

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32446]		NaCl		growth	0.5-30	%
[Ref.: #32446]		NaCl		optimum	2.5	%

[Ref.: #32446]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32446]		glycerol ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32446]	Sample type/isolated from	soda lake
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF554593 (>99% sequence identity) for Halolactibacillus alkaliphilus from Microbeatlas

Aquatic Samples	37
Soil Samples	3
Animal Samples	4
Plant Samples	2
Total Samples	46

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32446]	Halolactibacillus alkaliphilus strain H-5 16S ribosomal RNA gene, partial sequence	EF554593	1452	GenBank ENA	442899 tax ID
[Ref.: #124043]	Halolactibacillus alkaliphilus gene for 16S rRNA, partial sequence, strain: NBRC 103919.	AB682143	1490	GenBank ENA	442899 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halolactibacillus alkaliphilus NBRC 103919	GCA_007991355	contig	GenBank ENA	442899 tax ID	*
[Ref.: #66792]	Halolactibacillus alkaliphilus strain NBRC 103919	442899.5	wgs	PATRIC	442899 tax ID	*

[Ref.: #32446]

GC-content

38.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halolactibacillus alkaliphilus strain NBRC 103919 PATRIC: 442899.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	92	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halolactibacillus alkaliphilus strain NBRC 103919 PATRIC: 442899.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	82.742	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.44	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	54.617	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.873	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.045	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	86.926	no

Availability in culture collections External links

[Ref.: #32446]

Culture collection no.

CGMCC AS1.6843, NBRC 103919

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolactibacillus alkaliphilus sp. nov., a moderately alkaliphilic and halophilic bacterium isolated from a soda lake in Inner Mongolia, China, and emended description of the genus Halolactibacillus.	Cao SJ, Qu JH, Yang JS, Sun Q, Yuan HL	Int J Syst Evol Microbiol	10.1099/ijs.0.65511-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32446

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28668 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28668

IJSEM 2169 2008 ( DOI 10.1099/ijs.0.65511-0 , PubMed 18768624 )

* These data were automatically processed and therefore are not curated

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Halolactibacillus alkaliphilus strain NBRC 103919

Halolactibacillus alkaliphilus strain NBRC 103919

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