Name: Zobellella taiwanensis ZT1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134181

Type strain:

Species: Zobellella taiwanensis

Strain Designation: ZT1

Culture col. no.: BCRC 17494, JCM 13381

Strain history: W. Y. Shieh ZT1.

NCBI tax ID(s): 347535 (species)

SI-ID 297350

BCRC 17494, JCM 13381, CCRC 17494, DSM 19708

Section

Zobellella taiwanensis ZT1 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Zobellella*
	Species	**Zobellella taiwanensis**
	Full Scientific Name (LPSN)	Zobellella taiwanensis Lin and Shieh 2006

Information on morphological and physiological properties Morphology

[Ref.: #31723]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #31723]	Cell length	1-1.9 µm

[Ref.: #31723]	Cell width	0.6-0.7 µm

[Ref.: #31723]	Cell shape	rod-shaped

[Ref.: #31723]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.895

[Ref.: #31723]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31723]	growth	10-45 °C
[Ref.: #31723]	optimum	30-35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #31723]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31723]			optimum	7
[Ref.: #31723]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31723]

Oxygen tolerance

facultative anaerobe

[Ref.: #31723]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31723]		NaCl		growth	0-14	%
[Ref.: #31723]		NaCl		optimum	01-03	%

[Ref.: #31723]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31723]	glucose ChEBI	+	carbon source
[Ref.: #31723]	maltose ChEBI	+	carbon source
[Ref.: #31723]	mannitol ChEBI	+	carbon source
[Ref.: #31723]	mannose ChEBI	+	carbon source
[Ref.: #31723]	ribitol ChEBI	+	carbon source
[Ref.: #31723]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31723]	catalase	+	1.11.1.6
[Ref.: #31723]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31723]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31723]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Sediment sample collected from the estuarine mangrove ecosystem of Kuantu
[Ref.: #67770]	Geographic location (country and/or sea, region)	Taipei
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ195676 (>99% sequence identity) for Aeromonadaceae from Microbeatlas

Aquatic Samples	153
Soil Samples	33
Animal Samples	333
Plant Samples	3
Total Samples	522

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31723]	Zobellella taiwanensis strain ZT1 16S ribosomal RNA gene, partial sequence	DQ195676	1478	GenBank	347535 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zobellella taiwanensis JCM 13381	GCA_003012795	contig	GenBank	347535 tax ID
[Ref.: #66792]	Zobellella taiwanensis strain JCM 13381	347535.3	wgs	PATRIC	347535 tax ID	*
[Ref.: #66792]	Zobellella taiwanensis JCM 13381	2833752874	draft	JGI IMG/M	347535 tax ID	*

[Ref.: #31723]	GC-content	62 mol%
[Ref.: #67770]	GC-content	62 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zobellella taiwanensis strain JCM 13381 PATRIC: 347535.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zobellella taiwanensis strain JCM 13381 PATRIC: 347535.3
[Ref.: #69480]	gram-positive	no	98.818	no
[Ref.: #69480]	anaerobic	no	98.804	yes
[Ref.: #69480]	halophile	yes	56.746	no
[Ref.: #69480]	spore-forming	no	95.892	yes
[Ref.: #69480]	glucose-util	yes	91.971	no
[Ref.: #69480]	motile	yes	94.263	yes
[Ref.: #69480]	flagellated	yes	78.965	no
[Ref.: #69480]	thermophile	no	98.269	yes
[Ref.: #69480]	aerobic	yes	84.598	no
[Ref.: #69480]	glucose-ferment	yes	64.936	no

Availability in culture collections External links

[Ref.: #31723]

Culture collection no.

BCRC 17494, JCM 13381

[Ref.: #91779]

SI-ID 297350

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zobellella denitrificans gen. nov., sp. nov. and Zobellella taiwanensis sp. nov., denitrifying bacteria capable of fermentative metabolism.	Lin YT, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.64121-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31723

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27999 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91779

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297350.1 )

#27999

IJSEM 1209 2006 ( DOI 10.1099/ijs.0.64121-0 , PubMed 16738093 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Zobellella taiwanensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Zobellella taiwanensis strain JCM 13381

Zobellella taiwanensis strain JCM 13381

Change proposal

Change proposal