Strain identifier

BacDive ID: 134181

Type strain: Yes

Species: Zobellella taiwanensis

Strain Designation: ZT1

Strain history: W. Y. Shieh ZT1.

NCBI tax ID(s): 347535 (species)

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General

@ref: 31723

BacDive-ID: 134181

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Zobellella taiwanensis ZT1 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 347535
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Y. Shieh ZT1.

doi: 10.13145/bacdive134181.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Zobellella
  • species: Zobellella taiwanensis
  • full scientific name: Zobellella taiwanensis Lin and Shieh 2006

@ref: 31723

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Zobellella

species: Zobellella taiwanensis

strain designation: ZT1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31723negative1-1.9 µm0.6-0.7 µmrod-shapedyes
69480yes97.895
69480negative99.996

pigmentation

  • @ref: 31723
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31723positivegrowth10-45
31723positiveoptimum30-35mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
31723positivegrowth7
31723positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31723
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
31723no
69481no100
69480no99.993

halophily

@refsaltgrowthtested relationconcentration
31723NaClpositivegrowth0-14 %
31723NaClpositiveoptimum01-03 %

observation

  • @ref: 31723
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3172315963ribitol+carbon source
3172317234glucose+carbon source
3172317306maltose+carbon source
3172329864mannitol+carbon source
3172337684mannose+carbon source
3172317992sucrose+carbon source

enzymes

@refvalueactivityec
31723catalase+1.11.1.6
31723cytochrome oxidase+1.9.3.1
31723urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31723marine sediment
67770Sediment sample collected from the estuarine mangrove ecosystem of KuantuTaipeiTaiwanTWNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_67092.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_2774;97_36551;98_47301;99_67092&stattab=map
  • Last taxonomy: Aeromonadaceae
  • 16S sequence: DQ195676
  • Sequence Identity:
  • Total samples: 522
  • soil counts: 33
  • aquatic counts: 153
  • animal counts: 333
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 31723
  • description: Zobellella taiwanensis strain ZT1 16S ribosomal RNA gene, partial sequence
  • accession: DQ195676
  • length: 1478
  • database: nuccore
  • NCBI tax ID: 347535

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zobellella taiwanensis strain JCM 13381347535.3wgspatric347535
66792Zobellella taiwanensis JCM 133812833752874draftimg347535
67770Zobellella taiwanensis JCM 13381GCA_003012795contigncbi347535

GC content

@refGC-contentmethod
3172362
6777062high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.818no
anaerobicno98.804yes
halophileyes56.746no
spore-formingno95.892yes
glucose-utilyes91.971no
motileyes94.263yes
flagellatedyes78.965no
thermophileno98.269yes
aerobicyes84.598no
glucose-fermentyes64.936no

External links

@ref: 31723

culture collection no.: BCRC 17494, JCM 13381

straininfo link

  • @ref: 91779
  • straininfo: 297350

literature

  • topic: Phylogeny
  • Pubmed-ID: 16738093
  • title: Zobellella denitrificans gen. nov., sp. nov. and Zobellella taiwanensis sp. nov., denitrifying bacteria capable of fermentative metabolism.
  • authors: Lin YT, Shieh WY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64121-0
  • year: 2006
  • mesh: Aeromonadaceae/*classification/growth & development/isolation & purification/metabolism, Anaerobiosis, Culture Media, Fatty Acids/metabolism, Fermentation, Gram-Negative Bacteria/classification/isolation & purification, Gram-Negative Facultatively Anaerobic Rods/classification/isolation & purification, Kinetics, Molecular Sequence Data, Phylogeny
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31723Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172799928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91779Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID297350.1