Terrimonas lutea (IAM 15284, CCTCC AB 205006, DY)

Name: Terrimonas lutea (IAM 15284, CCTCC AB 205006, DY)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134180

Type strain

Strain Designation DY

Culture col. no. IAM 15284 CCTCC AB 205006 DY BCRC 17943 JCM 21735 1 more

NCBI tax ID(s) 296052

Special Collections JCM Literature strains CIP

History 2006, IAM IAM 15284 <-- C.-H. Xie strain DY. CIP <- 2006, IAM

Links

Terrimonas lutea DY is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Garden soil.

Gram-negative rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 291136

IAM 15284,JCM 21735,CIP 109226

@ref 20215

Last LPSN update 2026-02-09 11:32:07

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Terrimonas

Species Terrimonas lutea

Full scientific name Terrimonas lutea Xie and Yokota 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31718	negative	01-03 µm	0.3-0.5 µm	rod-shaped
120685	negative			rod-shaped

Pigmentation

31718

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
32785	MEDIUM 328- for nutrient agar		Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
120685	CIP Medium 328			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
31718	positive	growth	10-37
31718	positive	optimum	25-32
32785	positive	growth	30
67770	positive	growth	27

Culture pH

@ref	Ability	Type	PH
31718	positive	optimum	7
31718	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31718	aerobe
120685	obligate aerobe

Spore formation

31718

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31718	NaCl	positive	growth	0-1 %

Observation

@ref	Observation
31718	aggregates in chains
67770	quinones: MK-7, MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31718	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
31718	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
31718	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31718	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31718	28260 ChEBI	galactose	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31718	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31718	17716 ChEBI	lactose	+	carbon source
31718	17306 ChEBI	maltose	+	carbon source
31718	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
31718	28053 ChEBI	melibiose	+	carbon source
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31718	506227 ChEBI	N-acetylglucosamine	+	carbon source
31718	17632 ChEBI	nitrate	+	reduction
120685	17632 ChEBI	nitrate	-	reduction
120685	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31718	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31718	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120685	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
31718	catalase	+	1.11.1.6
120685	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
31718	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120685	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
120685	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120685	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120685	not determinedn.d.	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+	+/-	+	-	-	-	-	+	-	-	-	+/-	+	+	+	+	+	+/-	+/-	+/-	+	-	+/-	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Garden soil		Japan	JPN	Asia
120685	Environment, Soil, garden	Tokyo	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB192292 (>99% sequence identity) for Terrimonas lutea subclade from Microbeatlas

Aquatic Samples	412
Soil Samples	537
Animal Samples	296
Plant Samples	216
Total Samples	1461

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120685	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31718	Terrimonas lutea gene for 16S rRNA, partial sequence	AB192292	1431		296052

GC content

@ref	GC-content (mol%)	Method
31718	47.2
67770	47.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrimonas pekingensis sp. nov., isolated from bulking sludge, and emended descriptions of the genus Terrimonas, Terrimonas ferruginea, Terrimonas lutea and Terrimonas aquatica.	Jin D, Wang P, Bai Z, Jin B, Yu Z, Wang X, Zhuang G, Zhang H	Int J Syst Evol Microbiol	10.1099/ijs.0.036848-0	2012
Phylogeny	Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil.	Xie CH, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64115-0	2006

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27994	IJSEM 1117 2006 ( DOI 10.1099/ijs.0.64115-0 , PubMed 16627664 )
#31718	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27994
#32785	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120685	Collection of Institut Pasteur ; Curators of the CIP; CIP 109226
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Terrimonas lutea (IAM 15284, CCTCC AB 205006, DY)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media