Name: Haloferula sargassicola MN1-1037
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134083

Type strain:

Species: Haloferula sargassicola

Strain Designation: MN1-1037

Culture col. no.: MBIC 08343, KCTC 22202

Strain history: <- JW Yoon, Tokoy Univ., Japan <- H Kasai, MBI

NCBI tax ID(s): 490096 (species)

Section

Haloferula sargassicola MN1-1037 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Haloferula*
	Species	**Haloferula sargassicola**
	Full Scientific Name (LPSN)	Haloferula sargassicola Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31193]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31193]	Cell length	1-1.5 µm

[Ref.: #31193]	Cell width	0.8-1 µm

[Ref.: #31193]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31193]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31193]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31193]	growth	04-37 °C
[Ref.: #31193]	optimum	20-30 °C
[Ref.: #67771]	growth	20-30 °C

	pH	Kind of pH		pH
[Ref.: #31193]			optimum	6.5-9
[Ref.: #31193]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31193]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31193]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31193]		NaCl		growth	0-7	%
[Ref.: #31193]		NaCl		optimum	0-7	%

[Ref.: #31193]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31193]	arabinose ChEBI	+	carbon source
[Ref.: #31193]	cellobiose ChEBI	+	carbon source
[Ref.: #31193]	dextrin ChEBI	+	carbon source
[Ref.: #31193]	fructose ChEBI	+	carbon source
[Ref.: #31193]	galactose ChEBI	+	carbon source
[Ref.: #31193]	glucose ChEBI	+	carbon source
[Ref.: #31193]	glycogen ChEBI	+	carbon source
[Ref.: #31193]	lactose ChEBI	+	carbon source
[Ref.: #31193]	maltose ChEBI	+	carbon source
[Ref.: #31193]	mannose ChEBI	+	carbon source
[Ref.: #31193]	melibiose ChEBI	+	carbon source
[Ref.: #31193]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31193]	sucrose ChEBI	+	carbon source
[Ref.: #31193]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31193]	acid phosphatase	+	3.1.3.2
[Ref.: #31193]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31193]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31193]	Sample type/isolated from	marine sediment

[Ref.: #67771]	Sample type/isolated from	From brown algae, `Sargassum thunbergii`(Mertens ex Roth) Kuntze
[Ref.: #67771]	Geographic location (country and/or sea, region)	Abajima(3Â° 19â€² 13â€²â€² N 13Â° 56â€² 26â€²â€² E), Takehara, Hiroshima(Abajima)
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB372856 (>99% sequence identity) for Haloferula sargassicola from Microbeatlas

Aquatic Samples	346
Soil Samples	25
Animal Samples	79
Plant Samples	11
Total Samples	461

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31193]	Haloferula sargassicola gene for 16S rRNA, partial sequence, strain: MN1-1037	AB372856	1459	GenBank	490096 tax ID

[Ref.: #67771]

GC-content

64.7-64.8 mol%

Availability in culture collections External links

[Ref.: #31193]

Culture collection no.

MBIC 08343, KCTC 22202

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloferula luteola sp. nov., an endophytic bacterium isolated from the root of a halophyte, Rosa rugosa, and emended description of the genus Haloferula.	Bibi F, Chung EJ, Yoon HS, Song GC, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.022772-0	2010	*
Phylogeny	Haloferula rosicola sp. nov., an endophytic bacterium isolated from the root of a halophyte, Rosa rugosa, and emended description of the genus Haloferula.	Bibi F, Aslam Z, Song GC, Yoon HS, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.013698-0	2009	*
Phylogeny	Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'.	Yoon J, Matsuo Y, Katsuta A, Jang JH, Matsuda S, Adachi K, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000711-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31193

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27520 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27520

IJSEM 2491 2008 ( DOI 10.1099/ijs.0.2008/000711-0 , PubMed 18984682 )

* These data were automatically processed and therefore are not curated

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