Halomonas salifodinae (CGMCC 1.6774, JCM 14803, BC 7)

Name: Halomonas salifodinae (CGMCC 1.6774, JCM 14803, BC 7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134084

Type strain

Culture col. no. CGMCC 1.6774 JCM 14803 BC 7

NCBI tax ID(s) 438745

Special Collections JCM Literature strains

History JCM <-- X.-W. Xu BC7.

Links

Halomonas salifodinae CGMCC 1.6774 is an aerobe, Gram-negative, motile bacterium that was isolated from salt mine.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133708

JCM 14803

@ref 20215

Last LPSN update 2026-05-29 08:38:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas salifodinae

Full scientific name Halomonas salifodinae Wang et al. 2008

Synonyms (1)

Bisbaumannia salifodinae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31194	negative	04-06 µm	0.8-1.2 µm	rod-shaped

Pigmentation

31194

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31194	positive	growth	04-48
31194	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
31194	positive	optimum	7
31194	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31194	aerobe
125439	facultative anaerobe	91.512

Spore formation

@ref	Spore formation	Confidence
31194
125439		99.033

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31194	NaCl	positive	growth	0.5-20 %
31194	NaCl	positive	optimum	3 %

Observation

@ref	Observation
31194	aggregates in chains
67770	quinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31194	16449 ChEBI	alanine	+	carbon source
31194	29016 ChEBI	arginine	+	carbon source
31194	35391 ChEBI	aspartate	+	carbon source
31194	16947 ChEBI	citrate	+	carbon source
31194	28757 ChEBI	fructose	+	carbon source
31194	24265 ChEBI	gluconate	+	carbon source
31194	17234 ChEBI	glucose	+	carbon source
31194	29987 ChEBI	glutamate	+	carbon source
31194	17754 ChEBI	glycerol	+	carbon source
31194	27570 ChEBI	histidine	+	carbon source
31194	24996 ChEBI	lactate	+	carbon source
31194	25115 ChEBI	malate	+	carbon source
31194	17306 ChEBI	maltose	+	carbon source
31194	29864 ChEBI	mannitol	+	carbon source
31194	18257 ChEBI	ornithine	+	carbon source
31194	17272 ChEBI	propionate	+	carbon source
31194	15361 ChEBI	pyruvate	+	carbon source
31194	15963 ChEBI	ribitol	+	carbon source
31194	33942 ChEBI	ribose	+	carbon source
31194	17822 ChEBI	serine	+	carbon source
31194	30911 ChEBI	sorbitol	+	carbon source
31194	30031 ChEBI	succinate	+	carbon source
31194	17992 ChEBI	sucrose	+	carbon source
31194	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31194	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
31194	catalase	+	1.11.1.6
31194	cytochrome oxidase	+	1.9.3.1
31194	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Condition	#Saline	-

Isolation

@ref	Sample type
31194	salt mine
67770	Salt mine in north-western China

Taxonmaps

69479

Global distribution of 16S sequence EF527873 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	2819
Soil Samples	920
Animal Samples	4761
Plant Samples	244
Total Samples	8744

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952258v1 assembly for Halomonas salifodinae JCM 14803	contig	GCA_039522585	438745	69.17
124043	ASM4266308v1 assembly for Halomonas salifodinae CGMCC 1.6774	scaffold	GCA_042663085	438745	67.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31194	Halomonas salifodinae strain BC7 16S ribosomal RNA gene, partial sequence	EF527873	1428		1129894

GC content

31194

GC-content (mol%)65.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3952258v1 assembly for Halomonas salifodinae JCM 14803
NCBI: GCA_039522585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.51	no
125439	motility	BacteriaNetⓘ	yes	75.27	no
125439	gram_stain	BacteriaNetⓘ	negative	87.46	no
125439	spore_formation	BacteriaNetⓘ	no	99.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Draft genome sequence and comparative genomic analysis of Halomonas salifodinae strain A2 isolated from the Zapotitlán Salinas Valley, Puebla, Mexico.	Leon-Lemus A, Martinez-Garcia M, Cabirol N, Campos JE, Monsalvo-Reyes A.	Extremophiles	10.1007/s00792-025-01397-z	2025
Phylogeny	Halomonas salifodinae sp. nov., a halophilic bacterium isolated from a salt mine in China.	Wang Y, Wu YH, Wang CS, Xu XW, Oren A, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000729-0	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27521	IJSEM 2855 2008 ( DOI 10.1099/ijs.0.2008/000729-0 , PubMed 19060071 )
#31194	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27521
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas salifodinae (CGMCC 1.6774, JCM 14803, BC 7)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039522585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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