Name: Haloferula helveola 05IJR531
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134082

Type strain:

Species: Haloferula helveola

Strain Designation: 05IJR531

Culture col. no.: MBIC 08342, KCTC 22199

Strain history: <- JW Yoon, Tokoy Univ., Japan <- JH Jang, MBI

NCBI tax ID(s): 490095 (species)

Section

Haloferula helveola 05IJR531 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Haloferula*
	Species	**Haloferula helveola**
	Full Scientific Name (LPSN)	Haloferula helveola Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31193]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31193]	Cell length	1-1.2 µm

[Ref.: #31193]	Cell width	0.8-1 µm

[Ref.: #31193]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31193]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31193]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31193]	growth	20-37 °C
[Ref.: #31193]	optimum	25-30 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #31193]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31193]			optimum	6-8.5
[Ref.: #31193]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31193]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31193]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31193]		NaCl		growth	0-6	%
[Ref.: #31193]		NaCl		optimum	0-6	%

[Ref.: #31193]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31193]	cellobiose ChEBI	+	carbon source
[Ref.: #31193]	dextrin ChEBI	+	carbon source
[Ref.: #31193]	fructose ChEBI	+	carbon source
[Ref.: #31193]	galactose ChEBI	+	carbon source
[Ref.: #31193]	glucose ChEBI	+	carbon source
[Ref.: #31193]	lactose ChEBI	+	carbon source
[Ref.: #31193]	maltose ChEBI	+	carbon source
[Ref.: #31193]	mannose ChEBI	+	carbon source
[Ref.: #31193]	melibiose ChEBI	+	carbon source
[Ref.: #31193]	raffinose ChEBI	+	carbon source
[Ref.: #31193]	sucrose ChEBI	+	carbon source
[Ref.: #31193]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31193]	acid phosphatase	+	3.1.3.2
[Ref.: #31193]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31193]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31193]	Sample type/isolated from	marine sediment

[Ref.: #67771]	Sample type/isolated from	From seawater, the estuary of the Urauchi River(2Â° 24â€² 15.4â€²â€² N 12?Â° 46â€² 40.1â€²â€² E)
[Ref.: #67771]	Geographic location (country and/or sea, region)	Okinawa(Iriomotejima)
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB372855 (>99% sequence identity) for Haloferula helveola subclade from Microbeatlas

Aquatic Samples	4309
Soil Samples	399
Animal Samples	591
Plant Samples	76
Total Samples	5375

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31193]	Haloferula helveola gene for 16S rRNA, partial sequence, strain: 05IJR53-1	AB372855	1462	GenBank	490095 tax ID

[Ref.: #31193]

GC-content

64.9 mol%

Availability in culture collections External links

[Ref.: #31193]

Culture collection no.

MBIC 08342, KCTC 22199

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloferula rosea gen. nov., sp. nov., Haloferula harenae sp. nov., Haloferula phyci sp. nov., Haloferula helveola sp. nov. and Haloferula sargassicola sp. nov., five marine representatives of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia'.	Yoon J, Matsuo Y, Katsuta A, Jang JH, Matsuda S, Adachi K, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000711-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31193

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27520 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27520

IJSEM 2491 2008 ( DOI 10.1099/ijs.0.2008/000711-0 , PubMed 18984682 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Haloferula helveola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF