Name: Hymenobacter saemangeumensis GSR0100
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134031

Type strain:

Species: Hymenobacter saemangeumensis

Strain Designation: GSR0100

Culture col. no.: KACC 16452, JCM 17923

Strain history: K. Y. Jahng GSR0100.

NCBI tax ID(s): 1084522 (species)

Special Collections

Section

Hymenobacter saemangeumensis GSR0100 is a Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter saemangeumensis**
	Full Scientific Name (LPSN)	Hymenobacter saemangeumensis Kang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31092]	Gram stain	negative

[Ref.: #31092]	Cell length	2.5 µm

[Ref.: #31092]	Cell width	0.65 µm

[Ref.: #31092]	Cell shape	rod-shaped

[Ref.: #31092]	Motility	no

[Ref.: #31092]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31092]	growth	15-30 °C
[Ref.: #31092]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #31092]			optimum	7.5
[Ref.: #31092]			growth	5.5-10.0

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31092]		NaCl		growth	0-0.4	%

[Ref.: #31092]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31092]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #31092]	acetate ChEBI	+	carbon source
[Ref.: #31092]	arabinose ChEBI	+	carbon source
[Ref.: #31092]	cellobiose ChEBI	+	carbon source
[Ref.: #31092]	esculin ChEBI	+	hydrolysis
[Ref.: #31092]	itaconate ChEBI	+	carbon source
[Ref.: #31092]	L-arabitol ChEBI	+	carbon source
[Ref.: #31092]	mannose ChEBI	+	carbon source
[Ref.: #31092]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31092]	ribitol ChEBI	+	carbon source
[Ref.: #31092]	succinate ChEBI	+	carbon source
[Ref.: #31092]	thymidine ChEBI	+	carbon source
[Ref.: #31092]	tween 40 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31092]	acid phosphatase	+	3.1.3.2
[Ref.: #31092]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31092]	catalase	+	1.11.1.6
[Ref.: #31092]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31092]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31092]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater of the Mangyung estuary enclosed by the Saemangeum Embankment in Jeollabuk-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31092]	Hymenobacter saemangeumensis strain GSR0100 16S ribosomal RNA gene, partial sequence	JN607158	1371	GenBank ENA	1084522 tax ID

[Ref.: #31092]

GC-content

61.9 mol%

Availability in culture collections External links

[Ref.: #31092]

Culture collection no.

KACC 16452, JCM 17923

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter terrigena sp. nov., isolated from soil.	Ohn JE, Ten LN, Park KI, Kim BO, Han JS, Jung HY	J Microbiol	10.1007/s12275-018-8029-z	2018	*
Phylogeny	Hymenobacter agri sp. nov., a novel bacterium isolated from soil.	Han J, Ten LN, Lee DH, Kang IK, Jung HY	Antonie Van Leeuwenhoek	10.1007/s10482-018-1070-4	2018	*
Phylogeny	Hymenobacter monticola sp. nov., isolated from mountain soil.	Fan X, Wang Q, Zheng S, Shi K, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000792	2015	*
Phylogeny	Hymenobacter koreensis sp. nov. and Hymenobacter saemangeumensis sp. nov., isolated from estuarine water.	Kang JY, Chun J, Choi A, Moon SH, Cho JC, Jahng KY	Int J Syst Evol Microbiol	10.1099/ijs.0.051870-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31092

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27421 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#27421

IJSEM 4568 2013 ( DOI 10.1099/ijs.0.051870-0 , PubMed 23907229 )

* These data were automatically processed and therefore are not curated

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