Name: Chryseobacterium gwangjuense THG-A18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134032

Type strain:

Species: Chryseobacterium gwangjuense

Strain Designation: THG-A18

Culture col. no.: KACC 16227, LMG 26579

NCBI tax ID(s): 1069980 (species)

SI-ID 377928

LMG 26579, KACC 16227

Section

Chryseobacterium gwangjuense THG-A18 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium gwangjuense**
	Full Scientific Name (LPSN)	Chryseobacterium gwangjuense Park et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31099]	Gram stain	negative

[Ref.: #31099]	Cell length	1.7 µm

[Ref.: #31099]	Cell width	0.75 µm

[Ref.: #31099]	Cell shape	rod-shaped

[Ref.: #31099]	Motility	no

[Ref.: #31099]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31099]			growth	4.0-35 °C
[Ref.: #31099]			optimum	27.5 °C

[Ref.: #31099]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31099]			optimum	7.5
[Ref.: #31099]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31099]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31099]		NaCl		growth	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31099]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31099]	citrate ChEBI	+	carbon source
[Ref.: #31099]	esculin ChEBI	+	hydrolysis
[Ref.: #31099]	glucose ChEBI	+	carbon source
[Ref.: #31099]	maltose ChEBI	+	carbon source
[Ref.: #31099]	proline ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31099]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31099]	acid phosphatase	+	3.1.3.2
[Ref.: #31099]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31099]	catalase	+	1.11.1.6
[Ref.: #31099]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31099]	gelatinase	+
[Ref.: #31099]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31099]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31099]	Chryseobacterium gwangjuense strain THG-A18 16S ribosomal RNA gene, partial sequence	JN196134	1420	GenBank	1069980 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium gwangjuense THG-A18	GCA_021311115	scaffold	GenBank	1069980 tax ID	*

[Ref.: #31099]

GC-content

36.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium gwangjuense THG-A18 NCBI: GCA_021311115.1
[Ref.: #69480]	flagellated	no	96.19	yes
[Ref.: #69480]	gram-positive	no	98.105	no
[Ref.: #69480]	anaerobic	no	99.222	yes
[Ref.: #69480]	aerobic	yes	89.817	no
[Ref.: #69480]	halophile	no	97.189	no
[Ref.: #69480]	spore-forming	no	95.192	no
[Ref.: #69480]	motile	no	90.513	yes
[Ref.: #69480]	glucose-ferment	no	93.828	no
[Ref.: #69480]	thermophile	no	99.658	yes
[Ref.: #69480]	glucose-util	yes	83.98	yes

Availability in culture collections External links

[Ref.: #31099]

Culture collection no.

KACC 16227, LMG 26579

[Ref.: #91677]

SI-ID 377928

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium tagetis sp. nov., a plant growth promoting bacterium with an antimicrobial activity isolated from the roots of medicinal plant (Tagetes patula).	Chhetri G, Kim I, Kim J, So Y, Seo T	J Antibiot (Tokyo)	10.1038/s41429-022-00525-7	2022	*
Phylogeny	Chryseobacterium gwangjuense sp. nov., isolated from soil.	Park YJ, Son HM, Lee EH, Kim JH, Mavlonov GT, Choi KJ, Shin HS, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.052118-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31099

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27428 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91677

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377928.1 )

#27428

IJSEM 4580 2013 ( DOI 10.1099/ijs.0.052118-0 , PubMed 23907230 )

* These data were automatically processed and therefore are not curated

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