Hymenobacter koreensis (KACC 16451, JCM 17924, GYR3077)

Name: Hymenobacter koreensis (KACC 16451, JCM 17924, GYR3077)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134030

Type strain

Strain Designation GYR3077

Culture col. no. KACC 16451 JCM 17924 GYR3077

NCBI tax ID(s) 1084523

Special Collections JCM Literature strains

History K. Y. Jahng GYR3077.

Links

Hymenobacter koreensis GYR3077 is a Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133646

JCM 17924

@ref 20215

Last LPSN update 2026-02-09 11:32:05

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter koreensis

Full scientific name Hymenobacter koreensis Kang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31092	negative	2.35 µm	0.6 µm	rod-shaped

Pigmentation

31092

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31092	positive	growth	10-30
31092	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31092	positive	optimum	7.5
31092	positive	growth	6.5-9.5	alkaliphile

Physiology and metabolism

Observation

31092

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31092	30089 ChEBI	acetate	+	carbon source
31092	22599 ChEBI	arabinose	+	carbon source
31092	16947 ChEBI	citrate	+	carbon source
31092	24175 ChEBI	galacturonate	+	carbon source
31092	28053 ChEBI	melibiose	+	carbon source
31092	37657 ChEBI	methyl D-glucoside	+	carbon source
31092	18257 ChEBI	ornithine	+	carbon source
31092	26546 ChEBI	rhamnose	+	carbon source
31092	30911 ChEBI	sorbitol	+	carbon source
31092	30031 ChEBI	succinate	+	carbon source
31092	53423 ChEBI	tween 40	+	carbon source
31092	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31092	acid phosphatase	+	3.1.3.2
31092	alkaline phosphatase	+	3.1.3.1
31092	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
31092	seawater
67770	Seawater of the Mangyung estuary enclosed by the Saemangeum Embankment in Jeollabuk-do	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JN607157 (>99% sequence identity) for Hymenobacter koreensis subclade from Microbeatlas

Aquatic Samples	179
Soil Samples	574
Animal Samples	254
Plant Samples	163
Total Samples	1170

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954185v1 assembly for Hymenobacter koreensis JCM 17924	contig	GCA_039541855	1084523	67.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31092	Hymenobacter koreensis strain GYR3077 16S ribosomal RNA gene, partial sequence	JN607157	1374		1084523

GC content

31092

GC-content (mol%)60.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate.	Geng Y, Zhang Y, Tian J, Liu J, Qin K, Huang Y, Wei Z, Peng F	Antonie Van Leeuwenhoek	10.1007/s10482-019-01279-3	2019
Phylogeny	Hymenobacter koreensis sp. nov. and Hymenobacter saemangeumensis sp. nov., isolated from estuarine water.	Kang JY, Chun J, Choi A, Moon SH, Cho JC, Jahng KY	Int J Syst Evol Microbiol	10.1099/ijs.0.051870-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27421	IJSEM 4568 2013 ( DOI 10.1099/ijs.0.051870-0 , PubMed 23907229 )
#31092	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27421
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hymenobacter koreensis (KACC 16451, JCM 17924, GYR3077)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039541855

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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