Name: Paraburkholderia sprentiae LMG 27175
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133969

Type strain:

Species: Paraburkholderia sprentiae

Culture col. no.: LMG 27175, HAMBI 3357, WSM 5005

NCBI tax ID(s): 948107 (species)

SI-ID 380490

LMG 27175, HAMBI 3357

Section

Paraburkholderia sprentiae LMG 27175 is a Gram-negative, motile, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia sprentiae**
	Full Scientific Name (LPSN)	Paraburkholderia sprentiae (De Meyer et al. 2013) Sawana et al. 2015

Synonym

Burkholderia sprentiae

Information on morphological and physiological properties Morphology

[Ref.: #30975]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #30975]	Cell length	3 µm

[Ref.: #30975]	Cell width	0.9 µm

[Ref.: #30975]	Cell shape	rod-shaped

[Ref.: #30975]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.825

[Ref.: #30975]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30975]			growth	10-40 °C
[Ref.: #30975]			optimum	28 °C

[Ref.: #30975]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30975]			growth	4.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30975]		NaCl		growth	0-10	%

[Ref.: #30975]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30975]	arabinose ChEBI	+	carbon source
[Ref.: #30975]	citrate ChEBI	+	carbon source
[Ref.: #30975]	gluconate ChEBI	+	carbon source
[Ref.: #30975]	glucose ChEBI	+	carbon source
[Ref.: #30975]	malate ChEBI	+	carbon source
[Ref.: #30975]	mannitol ChEBI	+	carbon source
[Ref.: #30975]	mannose ChEBI	+	carbon source
[Ref.: #30975]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30975]	phenylacetate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30975]		catalase	+	1.11.1.6
[Ref.: #30975]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30975]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30975]	Burkholderia sprentiae WSM5005 partial 16S rRNA gene, type strain WSM5005T	HF549035	1415	GenBank	754502 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia sprentiae WSM5005	754502.7	complete	PATRIC	754502 tax ID	*
[Ref.: #66792]	Paraburkholderia sprentiae WSM5005	754502.9	plasmid	PATRIC	754502 tax ID	*
[Ref.: #66792]	Paraburkholderia sprentiae WSM5005	754502.10	plasmid	PATRIC	754502 tax ID	*
[Ref.: #66792]	Paraburkholderia sprentiae WSM5005	754502.11	plasmid	PATRIC	754502 tax ID	*

[Ref.: #30975]

GC-content

61.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraburkholderia sprentiae WSM5005 PATRIC: 754502.7
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia sprentiae WSM5005 PATRIC: 754502.7
[Ref.: #69480]	motile	yes	88.709	yes
[Ref.: #69480]	flagellated	no	90.632	no
[Ref.: #69480]	gram-positive	no	97.348	no
[Ref.: #69480]	anaerobic	no	98.799	no
[Ref.: #69480]	aerobic	yes	89.624	no
[Ref.: #69480]	halophile	no	93.086	no
[Ref.: #69480]	spore-forming	no	92.236	no
[Ref.: #69480]	glucose-util	yes	89.351	yes
[Ref.: #69480]	thermophile	no	99.361	yes
[Ref.: #69480]	glucose-ferment	no	90.681	no

Availability in culture collections External links

[Ref.: #30975]

Culture collection no.

LMG 27175, HAMBI 3357, WSM 5005

[Ref.: #91649]

SI-ID 380490

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface.	Gu JY, Zang SG, Sheng XF, He LY, Huang Z, Wang Q	Int J Syst Evol Microbiol	10.1099/ijs.0.000059	2015	*
Phylogeny	Burkholderia monticola sp. nov., isolated from mountain soil.	Baek I, Seo B, Lee I, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.066001-0	2014	*
Phylogeny	Burkholderia sprentiae sp. nov., isolated from Lebeckia ambigua root nodules.	De Meyer SE, Cnockaert M, Ardley JK, Maker G, Yates R, Howieson JG, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.048777-0	2013	*
Genetics	Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.).	Reeve W, De Meyer S, Terpolilli J, Melino V, Ardley J, Rui T, Tiwari R, Howieson J, Yates R, O'Hara G, Lu M, Bruce D, Detter C, Tapia R, Han C, Wei CL, Huntemann M, Han J, Chen IM, Mavromatis K, Markowitz V, Szeto E, Ivanova N, Mikhailova N, Ovchinnikova G, Pagani I, Pati A, Goodwin L, Peters L, Pitluck S, Woyke T, Kyrpides N	Stand Genomic Sci	10.4056/sigs.4558268	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30975

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27305 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91649

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380490.1 )

#27305

IJSEM 3950 2013 ( DOI 10.1099/ijs.0.048777-0 , PubMed 23710047 )

* These data were automatically processed and therefore are not curated

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Paraburkholderia sprentiae WSM5005

Paraburkholderia sprentiae WSM5005

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