Name: Paraburkholderia rhynchosiae LMG 27174
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133968

Type strain:

Species: Paraburkholderia rhynchosiae

Culture col. no.: LMG 27174, HAMBI 3354, WSM 3937

NCBI tax ID(s): 487049 (species)

SI-ID 380485

LMG 27174, HAMBI 3354

Section

Paraburkholderia rhynchosiae LMG 27174 is a Gram-negative, motile, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia rhynchosiae**
	Full Scientific Name (LPSN)	Paraburkholderia rhynchosiae (De Meyer et al. 2013) Sawana et al. 2017

Synonym

Burkholderia rhynchosiae

Information on morphological and physiological properties Morphology

[Ref.: #30973]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #30973]	Cell length	2 µm

[Ref.: #30973]	Cell width	0.9 µm

[Ref.: #30973]	Cell shape	rod-shaped

[Ref.: #30973]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.79

[Ref.: #30973]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30973]			growth	10-37 °C
[Ref.: #30973]			optimum	28 °C

[Ref.: #30973]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30973]			growth	04-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30973]		NaCl		growth	0-10	%

[Ref.: #30973]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30973]	arabinose ChEBI	+	carbon source
[Ref.: #30973]	citrate ChEBI	+	carbon source
[Ref.: #30973]	gluconate ChEBI	+	carbon source
[Ref.: #30973]	glucose ChEBI	+	carbon source
[Ref.: #30973]	malate ChEBI	+	carbon source
[Ref.: #30973]	mannitol ChEBI	+	carbon source
[Ref.: #30973]	mannose ChEBI	+	carbon source
[Ref.: #30973]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30973]	phenylacetate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30973]		catalase	+	1.11.1.6
[Ref.: #30973]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30973]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30973]	Burkholderia rhynchosiae strain WSM3937 16S ribosomal RNA gene, partial sequence	EU219865	1492	GenBank	487049 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia rhynchosiae LMG 27174	GCA_902859775	contig	GenBank	487049 tax ID	*
[Ref.: #66792]	Paraburkholderia rhynchosiae strain LMG 27174	487049.5	wgs	PATRIC	487049 tax ID	*

[Ref.: #30973]

GC-content

61.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraburkholderia rhynchosiae strain LMG 27174 PATRIC: 487049.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia rhynchosiae strain LMG 27174 PATRIC: 487049.5
[Ref.: #69480]	gram-positive	no	97.916	yes
[Ref.: #69480]	anaerobic	no	99.054	no
[Ref.: #69480]	halophile	no	93.959	no
[Ref.: #69480]	spore-forming	no	92.992	no
[Ref.: #69480]	glucose-util	yes	91.606	yes
[Ref.: #69480]	aerobic	yes	90.917	no
[Ref.: #69480]	thermophile	no	99.384	yes
[Ref.: #69480]	motile	yes	90.961	yes
[Ref.: #69480]	flagellated	no	84.768	no
[Ref.: #69480]	glucose-ferment	no	90.894	no

Availability in culture collections External links

[Ref.: #30973]

Culture collection no.

LMG 27174, HAMBI 3354, WSM 3937

[Ref.: #91648]

SI-ID 380485

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraburkholderia lacunae sp. nov., isolated from soil near an artificial pond.	Feng T, Jeong SE, Lim JJ, Hyun S, Jeon CO	J Microbiol	10.1007/s12275-019-8463-6	2019	*
Phylogeny	Paraburkholderia panacihumi sp. nov., an isolate from ginseng-cultivated soil, is antagonistic against root rot fungal pathogen.	Huo Y, Kang JP, Kim YJ, Yang DC	Arch Microbiol	10.1007/s00203-018-1530-2	2018	*
Phylogeny	Burkholderia dilworthii sp. nov., isolated from Lebeckia ambigua root nodules.	De Meyer SE, Cnockaert M, Ardley JK, Van Wyk BE, Vandamme PA, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.058602-0	2013	*
Phylogeny	Burkholderia rhynchosiae sp. nov., isolated from Rhynchosia ferulifolia root nodules.	De Meyer SE, Cnockaert M, Ardley JK, Trengove RD, Garau G, Howieson JG, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.048751-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30973

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27303 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91648

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380485.1 )

#27303

IJSEM 3944 2013 ( DOI 10.1099/ijs.0.048751-0 , PubMed 23710046 )

* These data were automatically processed and therefore are not curated

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Paraburkholderia rhynchosiae strain LMG 27174

Paraburkholderia rhynchosiae strain LMG 27174

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