Martelella endophytica (KCCM 43011, NBRC 109149, YC6887)

Name: Martelella endophytica (KCCM 43011, NBRC 109149, YC6887)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133970

Type strain

Strain Designation YC6887

Culture col. no. KCCM 43011 NBRC 109149 YC6887

NCBI tax ID(s) 1486262

Special Collections Literature strains

Links

Martelella endophytica YC6887 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132507

NBRC 109149

@ref 20215

Last LPSN update 2026-05-29 08:38:13

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Martelella

Species Martelella endophytica

Full scientific name Martelella endophytica Bibi et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30976	negative	1.75 µm	0.65 µm	rod-shaped
125438	negative					98.8

Pigmentation

30976

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30976	positive	growth	04-40
30976	positive	optimum	29

Culture pH

@ref	Ability	Type	PH	PH range
30976	positive	optimum	7.75
30976	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

30976

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
30976
125438		90.539

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30976	NaCl	positive	growth	0-9 %

Observation

30976

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30976	22599 ChEBI	arabinose	+	carbon source
30976	4853 ChEBI	esculin	+	hydrolysis
30976	17234 ChEBI	glucose	+	carbon source
30976	17306 ChEBI	maltose	+	carbon source
30976	29864 ChEBI	mannitol	+	carbon source
30976	37684 ChEBI	mannose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30976	acid phosphatase	+	3.1.3.2
30976	alkaline phosphatase	+	3.1.3.1
30976	catalase	+	1.11.1.6
30976	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	methylglyoxal degradation	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	glycogen biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	lactate fermentation	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	alanine metabolism	93.1	27 of 29
66794	citric acid cycle	92.86	13 of 14
66794	proline metabolism	90.91	10 of 11
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	degradation of hexoses	88.89	16 of 18
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	allantoin degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	urea cycle	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	degradation of sugar acids	84	21 of 25
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	purine metabolism	82.98	78 of 94
66794	degradation of pentoses	82.14	23 of 28
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	cellulose degradation	80	4 of 5
66794	creatinine degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	lipid A biosynthesis	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	histidine metabolism	75.86	22 of 29
66794	CMP-KDO biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	arginine metabolism	75	18 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	cyclohexanol degradation	75	3 of 4
66794	d-xylose degradation	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	starch degradation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	oxidative phosphorylation	68.13	62 of 91
66794	cysteine metabolism	66.67	12 of 18
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	polyamine pathway	65.22	15 of 23
66794	lipid metabolism	64.52	20 of 31
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	myo-inositol biosynthesis	60	6 of 10
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	sulfate reduction	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	tyrosine metabolism	50	7 of 14
66794	kanosamine biosynthesis II	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	biotin biosynthesis	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	sphingosine metabolism	50	3 of 6
66794	metabolism of disaccharids	45.45	5 of 11
66794	phenol degradation	45	9 of 20
66794	arachidonic acid metabolism	44.44	8 of 18
66794	ascorbate metabolism	40.91	9 of 22
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	cholesterol biosynthesis	36.36	4 of 11
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	sulfoquinovose degradation	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	carotenoid biosynthesis	31.82	7 of 22
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	vitamin B12 metabolism	29.41	10 of 34
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	chlorophyll metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

30976

Sample typeplant associated

Taxonmaps

69479

Global distribution of 16S sequence HM800924 (>99% sequence identity) for Martelella from Microbeatlas

Aquatic Samples	539
Soil Samples	656
Animal Samples	547
Plant Samples	225
Total Samples	1967

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM96097v1 assembly for Martelella endophytica YC6887	complete	GCA_000960975	2619619303	1486262	95.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30976	Martelella endophytica strain YC6887 16S ribosomal RNA gene, partial sequence	HM800924	1495		1486262

GC content

30976

GC-content (mol%)62.1

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Martelella endophytica YC6887
NCBI: GCA_000960975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.80	yes
125438	anaerobic	anaerobicⓘ	no	93.96	yes
125438	aerobic	aerobicⓘ	yes	55.63	yes
125438	spore-forming	spore-formingⓘ	no	90.54	yes
125438	thermophilic	thermophileⓘ	no	97.09	yes
125438	flagellated	motile2+ⓘ	no	67.97	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Isolation and Characterization of an Acidic, Salt-Tolerant Endoglucanase Cel5A from a Bacterial Strain Martelella endophytica YC6887 Genome.	Khan A, Khan H, Faheem M, Zeb A, Badshah M, Chung YR	Mol Biotechnol	10.1007/s12033-020-00295-3	2021
Genetics	Complete Genome Sequence of Martelella endophytica YC6887, Which Has Antifungal Activity Associated with a Halophyte.	Khan A, Khan H, Chung EJ, Hossain MT, Chung YR	Genome Announc	10.1128/genomeA.00366-15	2015
Phylogeny	Martelella suaedae sp. nov. and Martelella limonii sp. nov., isolated from the root of halophytes.	Chung EJ, Hwang JM, Kim KH, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijsem.0.001288	2016
Phylogeny	Martelella endophytica sp. nov., an antifungal bacterium associated with a halophyte.	Bibi F, Chung EJ, Khan A, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.048785-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27306	IJSEM 2914 2013 ( DOI 10.1099/ijs.0.048785-0 , PubMed 23355694 )
#30976	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27306
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Martelella endophytica (KCCM 43011, NBRC 109149, YC6887)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000960975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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