Halopelagius fulvigenes (CCTCC AB 2010456, JCM 17506, YIM 94188)

Name: Halopelagius fulvigenes (CCTCC AB 2010456, JCM 17506, YIM 94188)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133906

Type strain

Culture col. no. CCTCC AB 2010456 JCM 17506 YIM 94188

NCBI tax ID(s) 1198324

Special Collections JCM Literature strains

History JCM <-- S.-K. Tang YIM 94188.

Links

Halopelagius fulvigenes CCTCC AB 2010456 is an aerobe, Gram-negative, coccus-shaped archaeon that was isolated from freshwater .

Gram-negative coccus-shaped aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 132545

JCM 17506

@ref 20215

Last LPSN update 2026-05-29 08:38:12

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halopelagius

Species Halopelagius fulvigenes

Full scientific name Halopelagius fulvigenes Liu et al. 2013

BacDive ID	Other strains from **Halopelagius fulvigenes** (1)	Type strain
162030	H. fulvigenes JCM 17507

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30844	negative	1.2 µm	1.2 µm	coccus-shaped

Pigmentation

30844

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30844	positive	growth	20-55
30844	positive	optimum	39.5
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
30844	positive	optimum	6.75
30844	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30844	aerobe
125439	facultative anaerobe	91.837

Spore formation

@ref	Spore formation	Confidence
125439		96.79

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30844	NaCl	positive	growth	10-30 %
30844	NaCl	positive	optimum	22.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30844	30089 ChEBI	acetate	+	carbon source
30844	29016 ChEBI	arginine	+	carbon source
30844	16947 ChEBI	citrate	+	carbon source
30844	28757 ChEBI	fructose	+	carbon source
30844	28260 ChEBI	galactose	+	carbon source
30844	17234 ChEBI	glucose	+	carbon source
30844	17754 ChEBI	glycerol	+	carbon source
30844	24996 ChEBI	lactate	+	carbon source
30844	17716 ChEBI	lactose	+	carbon source
30844	25115 ChEBI	malate	+	carbon source
30844	17306 ChEBI	maltose	+	carbon source
30844	37684 ChEBI	mannose	+	carbon source
30844	15361 ChEBI	pyruvate	+	carbon source
30844	16634 ChEBI	raffinose	+	carbon source
30844	30911 ChEBI	sorbitol	+	carbon source
30844	30031 ChEBI	succinate	+	carbon source
30844	17992 ChEBI	sucrose	+	carbon source
30844	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30844	16136 ChEBI	hydrogen sulfide
30844	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30844	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
30844	catalase	+	1.11.1.6
30844	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
30844	freshwater (river, lake, pond)
67770	Salt soil of the Qijiaojing lake in Xinjiang Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ996497 (>99% sequence identity) for Halopelagius from Microbeatlas

Aquatic Samples	36
Soil Samples	8
Animal Samples	0
Plant Samples	0
Total Samples	44

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266262v1 assembly for Halopelagius fulvigenes YIM 94188	scaffold	GCA_042662625	1198324	73.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30844	Halopelagius fulvigenes strain YIM 94188 16S ribosomal RNA gene, partial sequence	JQ996497	1484		1198324

GC content

@ref	GC-content (mol%)	Method
30844	66.3
67770	66.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4266262v1 assembly for Halopelagius fulvigenes YIM 94188
NCBI: GCA_042662625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.84	no
125439	motility	BacteriaNetⓘ	yes	40.69	no
125439	gram_stain	BacteriaNetⓘ	negative	71.01	no
125439	spore_formation	BacteriaNetⓘ	no	96.79	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halopelagius fulvigenes sp. nov., a halophilic archaeon isolated from a lake.	Liu BB, Tang SK, Cui HL, Zhang YG, Li L, Zhang YM, Zhang LL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.045773-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27174	IJSEM 2192 2013 ( DOI 10.1099/ijs.0.045773-0 , PubMed 23125321 )
#30844	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27174
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halopelagius fulvigenes (CCTCC AB 2010456, JCM 17506, YIM 94188)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042662625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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