Name: Halopelagius fulvigenes CCTCC AB 2010456
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133906

Type strain:

Species: Halopelagius fulvigenes

Culture col. no.: CCTCC AB 2010456, JCM 17506, YIM 94188

Strain history: S.-K. Tang YIM 94188.

NCBI tax ID(s): 1198324 (species)

Other strains from Halopelagius fulvigenes

H. fulvigenes JCM 17507

Section

Halopelagius fulvigenes CCTCC AB 2010456 is an aerobe, Gram-negative, coccus-shaped archaeon that was isolated from freshwater .

coccus-shaped
Gram-negative
aerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Halopelagius*
	Species	**Halopelagius fulvigenes**
	Full Scientific Name (LPSN)	Halopelagius fulvigenes Liu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30844]	Gram stain	negative

[Ref.: #30844]	Cell length	1.2 µm

[Ref.: #30844]	Cell width	1.2 µm

[Ref.: #30844]	Cell shape	coccus-shaped

[Ref.: #30844]	Motility	no

[Ref.: #30844]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30844]	growth	20-55 °C
[Ref.: #30844]	optimum	39.5 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #30844]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30844]			optimum	6.75
[Ref.: #30844]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30844]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30844]		NaCl		growth	10-30	%
[Ref.: #30844]		NaCl		optimum	22.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30844]	acetate ChEBI	+	carbon source
[Ref.: #30844]	arginine ChEBI	+	carbon source
[Ref.: #30844]	citrate ChEBI	+	carbon source
[Ref.: #30844]	fructose ChEBI	+	carbon source
[Ref.: #30844]	galactose ChEBI	+	carbon source
[Ref.: #30844]	glucose ChEBI	+	carbon source
[Ref.: #30844]	glycerol ChEBI	+	carbon source
[Ref.: #30844]	lactate ChEBI	+	carbon source
[Ref.: #30844]	lactose ChEBI	+	carbon source
[Ref.: #30844]	malate ChEBI	+	carbon source
[Ref.: #30844]	maltose ChEBI	+	carbon source
[Ref.: #30844]	mannose ChEBI	+	carbon source
[Ref.: #30844]	pyruvate ChEBI	+	carbon source
[Ref.: #30844]	raffinose ChEBI	+	carbon source
[Ref.: #30844]	sorbitol ChEBI	+	carbon source
[Ref.: #30844]	succinate ChEBI	+	carbon source
[Ref.: #30844]	sucrose ChEBI	+	carbon source
[Ref.: #30844]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30844]		hydrogen sulfide ChEBI	yes
[Ref.: #30844]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30844]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30844]		catalase	+	1.11.1.6
[Ref.: #30844]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30844]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67770]	Sample type/isolated from	Salt soil of the Qijiaojing lake in Xinjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ996497 (>99% sequence identity) for Halopelagius from Microbeatlas

Aquatic Samples	36
Soil Samples	8
Animal Samples
Plant Samples
Total Samples	44

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30844]	Halopelagius fulvigenes strain YIM 94188 16S ribosomal RNA gene, partial sequence	JQ996497	1484	GenBank	1198324 tax ID

[Ref.: #30844]	GC-content	66.3 mol%
[Ref.: #67770]	GC-content	66.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30844]

Culture collection no.

CCTCC AB 2010456, JCM 17506, YIM 94188

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halopelagius fulvigenes sp. nov., a halophilic archaeon isolated from a lake.	Liu BB, Tang SK, Cui HL, Zhang YG, Li L, Zhang YM, Zhang LL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.045773-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30844

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27174 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27174

IJSEM 2192 2013 ( DOI 10.1099/ijs.0.045773-0 , PubMed 23125321 )

* These data were automatically processed and therefore are not curated

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