Name: Algibacter aquimarinus KYW589
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133907

Type strain:

Species: Algibacter aquimarinus

Strain Designation: KYW589

Culture col. no.: KCTC 23928, JCM 18287

Strain history: <- CN Seong, Sunchon Natl. Univ., Korea

NCBI tax ID(s): 1136748 (species)

Section

Algibacter aquimarinus KYW589 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter aquimarinus**
	Full Scientific Name (LPSN)	Algibacter aquimarinus Park et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30847]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30847]	Cell length	1.95 µm

[Ref.: #30847]	Cell width	0.3 µm

[Ref.: #30847]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30847]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #30847]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30847]	growth	04-30 °C
[Ref.: #30847]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #30847]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30847]			optimum	7
[Ref.: #30847]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30847]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30847]		NaCl		growth	01-07	%
[Ref.: #30847]		NaCl		optimum	2.5	%

[Ref.: #30847]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30847]		esculin ChEBI	+	hydrolysis

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30847]		acid phosphatase	+	3.1.3.2
[Ref.: #30847]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30847]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater from Gwangyang Bay,(34° 53' N 127° 46' E)
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
[Ref.: #67770]	Geographic location	34.8500°/127.7830°

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gwangyang Bay
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	34.8833°/127.7670°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ259859 (>99% sequence identity) for Algibacter aquimarinus subclade from Microbeatlas

Aquatic Samples	253
Soil Samples	2
Animal Samples	3
Plant Samples	6
Total Samples	264

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30847]	Algibacter aquimarinus strain KYW589 16S ribosomal RNA gene, partial sequence	JQ259859	1457	GenBank	1136748 tax ID

[Ref.: #30847]	GC-content	38.6 mol%
[Ref.: #67771]	GC-content	37.9-39.3 mol%

Availability in culture collections External links

[Ref.: #30847]

Culture collection no.

KCTC 23928, JCM 18287

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algibacter aquimarinus sp. nov., isolated from a marine environment, and reclassification of Pontirhabdus pectinivorans as Algibacter pectinivorans comb. nov.	Park SC, Hwang YM, Choe HN, Baik KS, Kim H, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.045815-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30847

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27177 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27177

IJSEM 2038 2013 ( DOI 10.1099/ijs.0.045815-0 , PubMed 23041642 )

* These data were automatically processed and therefore are not curated

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