Name: Pseudofulvibacter geojedonensis YCS-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133876

Type strain:

Species: Pseudofulvibacter geojedonensis

Strain Designation: YCS-9

Culture col. no.: KCTC 23884, CCUG 62114

NCBI tax ID(s): 1123758 (species)

Section

Pseudofulvibacter geojedonensis YCS-9 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Pseudofulvibacter*
	Species	**Pseudofulvibacter geojedonensis**
	Full Scientific Name (LPSN)	Pseudofulvibacter geojedonensis Yoon et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30744]	Gram stain	negative
[Ref.: #30744]	Cell length	2.9 µm
[Ref.: #30744]	Cell width	0.45 µm
[Ref.: #30744]	Cell shape	rod-shaped
[Ref.: #30744]	Motility	no

[Ref.: #62786]

Incubation period

3 days

[Ref.: #30744]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30744]	growth	10-37 °C
[Ref.: #30744]	optimum	25 °C
[Ref.: #62786]	growth	30 °C

[Ref.: #30744]	Temperature range	mesophilic
[Ref.: #62786]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30744]			optimum	7.5
[Ref.: #30744]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30744]	Oxygen tolerance	aerobe
[Ref.: #62786]	Oxygen tolerance	aerobe

[Ref.: #30744]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30744]		NaCl		growth	02-05	%
[Ref.: #30744]		NaCl		optimum	2	%

[Ref.: #30744]

Observation

aggregates in clumps

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30744]		esculin ChEBI	+	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #30744]	acid phosphatase	+	3.1.3.2
[Ref.: #30744]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30744]	catalase	+	1.11.1.6
[Ref.: #30744]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30744]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30744]	Sample type/isolated from	seawater

[Ref.: #62786]	Sample type/isolated from	Seawater
[Ref.: #62786]	Sampling date	2008
[Ref.: #62786]	Geographic location (country and/or sea, region)	South Sea,Geojedo
[Ref.: #62786]	Country	Republic of Korea
[Ref.: #62786]	Country ISO 3 Code	KOR
[Ref.: #62786]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN885200 (>99% sequence identity) for Pseudofulvibacter geojedonensis subclade from Microbeatlas

Aquatic Samples	636
Soil Samples	5
Animal Samples	23
Plant Samples
Total Samples	664

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30744]	Pseudofulvibacter geojedonensis strain YCS-9 16S ribosomal RNA gene, partial sequence	JN885200	1446	GenBank	1123758 tax ID

[Ref.: #30744]

GC-content

34.2 mol%

Availability in culture collections External links

[Ref.: #30744]

Culture collection no.

KCTC 23884, CCUG 62114

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudofulvibacter marinus sp. nov., isolated from seawater.	Wang Y, Zhou C, Ming H, Kang J, Chen H, Jing C, Feng H, Chang Y, Guo Z, Wang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.000879	2016	*
Phylogeny	Pseudofulvibacter gastropodicola sp. nov., isolated from a marine conch and emended descriptions of the genus Pseudofulvibacter Yoon et al. 2013 and Pseudofulvibacter geojedonensis.	Yang SH, Seo HS, Lee JH, Kim SJ, Kyoung Kwon K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000734	2015	*
Phylogeny	Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter.	Yoon JH, Lee MH, Jung YT	Int J Syst Evol Microbiol	10.1099/ijs.0.043513-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30744

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27075 (see below)

#62786 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62114

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27075

IJSEM 1696 2013 ( DOI 10.1099/ijs.0.043513-0 , PubMed 22904231 )

* These data were automatically processed and therefore are not curated

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