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Strain identifier

BacDive ID: 133876

Type strain: Yes

Species: Pseudofulvibacter geojedonensis

Strain Designation: YCS-9

NCBI tax ID(s): 1123758 (species)

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@ref: 30744

BacDive-ID: 133876

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Pseudofulvibacter geojedonensis YCS-9 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1123758
  • Matching level: species

doi: 10.13145/bacdive133876.20230509.8

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Pseudofulvibacter
  • species: Pseudofulvibacter geojedonensis
  • full scientific name: Pseudofulvibacter geojedonensis Yoon et al. 2013

@ref: 30744

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Pseudofulvibacter

species: Pseudofulvibacter geojedonensis

strain designation: YCS-9

type strain: yes


cell morphology

  • @ref: 30744
  • gram stain: negative
  • cell length: 2.9 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 62786
  • incubation period: 3 days


  • @ref: 30744
  • production: yes

Culture and growth conditions

culture temp


culture pH


Physiology and metabolism

oxygen tolerance

@refoxygen tolerance

spore formation

  • @ref: 30744
  • spore formation: no


@refsaltgrowthtested relationconcentration
30744NaClpositivegrowth02-05 %
30744NaClpositiveoptimum2 %


  • @ref: 30744
  • observation: aggregates in clumps

metabolite utilization

  • @ref: 30744
  • Chebi-ID: 4853
  • metabolite: esculin
  • utilization activity: +
  • kind of utilization tested: hydrolysis


30744acid phosphatase+
30744alkaline phosphatase+
30744cytochrome oxidase+

Isolation, sampling and environmental information


@refsample typesampling dategeographic locationcountryorigin.countrycontinent
62786Seawater2008South Sea,GeojedoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine


  • @ref: 69479
  • File name: preview.99_27807.png
  • url:;96_13772;97_16769;98_20820;99_27807&stattab=map
  • Last taxonomy: Pseudofulvibacter geojedonensis subclade
  • 16S sequence: JN885200
  • Sequence Identity:
  • Total samples: 664
  • soil counts: 5
  • aquatic counts: 636
  • animal counts: 23

Sequence information

16S sequences

  • @ref: 30744
  • description: Pseudofulvibacter geojedonensis strain YCS-9 16S ribosomal RNA gene, partial sequence
  • accession: JN885200
  • length: 1446
  • database: nuccore
  • NCBI tax ID: 1123758

GC content

  • @ref: 30744
  • GC-content: 34.2

External links

@ref: 30744

culture collection no.: KCTC 23884, CCUG 62114

straininfo link



Phylogeny22904231Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter.Yoon JH, Lee MH, Jung YTInt J Syst Evol Microbiol10.1099/ijs.0.043513-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny26537663Pseudofulvibacter gastropodicola sp. nov., isolated from a marine conch and emended descriptions of the genus Pseudofulvibacter Yoon et al. 2013 and Pseudofulvibacter geojedonensis.Yang SH, Seo HS, Lee JH, Kim SJ, Kyoung Kwon KInt J Syst Evol Microbiol10.1099/ijsem.0.0007342015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/genetics/isolation & purification, Gastropoda/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26739348Pseudofulvibacter marinus sp. nov., isolated from seawater.Wang Y, Zhou C, Ming H, Kang J, Chen H, Jing C, Feng H, Chang Y, Guo Z, Wang LInt J Syst Evol Microbiol10.1099/ijsem.0.0008792016


20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
30744Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127075
62786Curators of the CCUG Collection University of Gothenburg (CCUG) (CCUG 62114)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 beta