Name: Chelativorans composti Nis3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133790

Type strain:

Species: Chelativorans composti

Strain Designation: Nis3

Culture col. no.: JCM 17863, KCTC 23707

Strain history: S. Yabe Nis3.

NCBI tax ID(s): 768533 (species)

Section

Chelativorans composti Nis3 is a Gram-positive, ovoid-shaped bacterium that was isolated from Compost.

Gram-positive
ovoid-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Chelativorans*
	Species	**Chelativorans composti**
	Full Scientific Name (LPSN)	Chelativorans composti (Yabe et al. 2012) Kämpfer et al. 2015

Synonym

Thermovum composti

Information on morphological and physiological properties Morphology

[Ref.: #30514]	Gram stain	positive

[Ref.: #30514]	Cell shape	ovoid-shaped

[Ref.: #30514]	Motility	no

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30514]	growth	23-57 °C
[Ref.: #30514]	optimum	50 °C
[Ref.: #67770]	growth	45 °C

[Ref.: #30514]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30514]			optimum	7
[Ref.: #30514]			growth	5.9-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30514]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30514]		NaCl		growth	<4	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30514]	arabinose ChEBI	+	carbon source
[Ref.: #30514]	cellobiose ChEBI	+	carbon source
[Ref.: #30514]	fucose ChEBI	+	carbon source
[Ref.: #30514]	galactose ChEBI	+	carbon source
[Ref.: #30514]	glucose ChEBI	+	carbon source
[Ref.: #30514]	lactose ChEBI	+	carbon source
[Ref.: #30514]	melibiose ChEBI	+	carbon source
[Ref.: #30514]	nitrate ChEBI	+	reduction
[Ref.: #30514]	ribose ChEBI	+	carbon source
[Ref.: #30514]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30514]		catalase	+	1.11.1.6
[Ref.: #30514]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30514]	Sample type/isolated from	Compost

[Ref.: #67770]	Sample type/isolated from	Compost
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB563785 (>99% sequence identity) for Chelativorans composti subclade from Microbeatlas

Aquatic Samples	707
Soil Samples	2515
Animal Samples	1488
Plant Samples	585
Total Samples	5295

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30514]	Thermovum composti gene for 16S rRNA, partial sequence	AB563785	1402	GenBank	768533 tax ID

[Ref.: #30514]	GC-content	63.4 mol%
[Ref.: #67770]	GC-content	63.4 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30514]

Culture collection no.

JCM 17863, KCTC 23707

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermovum composti gen. nov., sp. nov., an alphaproteobacterium from compost.	Yabe S, Aiba Y, Sakai Y, Hazaka M, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.037812-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30514

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26846 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26846

IJSEM 2991 2012 ( DOI 10.1099/ijs.0.037812-0 , PubMed 22307514 )

* These data were automatically processed and therefore are not curated

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