Strain identifier

BacDive ID: 133790

Type strain: Yes

Species: Chelativorans composti

Strain Designation: Nis3

Strain history: S. Yabe Nis3.

NCBI tax ID(s): 768533 (species)

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General

@ref: 30514

BacDive-ID: 133790

keywords: 16S sequence, Bacteria, Gram-positive, ovoid-shaped

description: Chelativorans composti Nis3 is a Gram-positive, ovoid-shaped bacterium that was isolated from Compost.

NCBI tax id

  • NCBI tax id: 768533
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. Yabe Nis3.

doi: 10.13145/bacdive133790.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Chelativorans
  • species: Chelativorans composti
  • full scientific name: Chelativorans composti (Yabe et al. 2012) Kämpfer et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Thermovum composti

@ref: 30514

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Chelativorans

species: Chelativorans composti

strain designation: Nis3

type strain: yes

Morphology

cell morphology

  • @ref: 30514
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30514positivegrowth23-57
30514positiveoptimum50thermophilic
67770positivegrowth45thermophilic

culture pH

@refabilitytypepHPH range
30514positivegrowth5.9-8.8alkaliphile
30514positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 30514
  • spore formation: no

halophily

  • @ref: 30514
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <4 %

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3051422599arabinose+carbon source
3051417057cellobiose+carbon source
3051433984fucose+carbon source
3051428260galactose+carbon source
3051417234glucose+carbon source
3051417716lactose+carbon source
3051428053melibiose+carbon source
3051433942ribose+carbon source
3051418222xylose+carbon source
3051417632nitrate+reduction

enzymes

@refvalueactivityec
30514catalase+1.11.1.6
30514cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample type
30514Compost
67770Compost

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Biodegradation
  • Cat3: #Composting

taxonmaps

  • @ref: 69479
  • File name: preview.99_16821.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_8632;97_10380;98_12730;99_16821&stattab=map
  • Last taxonomy: Chelativorans composti subclade
  • 16S sequence: AB563785
  • Sequence Identity:
  • Total samples: 5295
  • soil counts: 2515
  • aquatic counts: 707
  • animal counts: 1488
  • plant counts: 585

Sequence information

16S sequences

  • @ref: 30514
  • description: Thermovum composti gene for 16S rRNA, partial sequence
  • accession: AB563785
  • length: 1402
  • database: nuccore
  • NCBI tax ID: 768533

GC content

@refGC-contentmethod
3051463.4
6777063.4high performance liquid chromatography (HPLC)

External links

@ref: 30514

culture collection no.: JCM 17863, KCTC 23707

literature

  • topic: Phylogeny
  • Pubmed-ID: 22307514
  • title: Thermovum composti gen. nov., sp. nov., an alphaproteobacterium from compost.
  • authors: Yabe S, Aiba Y, Sakai Y, Hazaka M, Yokota A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.037812-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, Fatty Acids/analysis, Japan, Molecular Sequence Data, Phospholipids/analysis, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30514Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172684628776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/