Aestuariibaculum suncheonense (KACC 16186, JCM 17789, SC 17)

Name: Aestuariibaculum suncheonense (KACC 16186, JCM 17789, SC 17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133791

Type strain

Culture col. no. KACC 16186 JCM 17789 SC 17

NCBI tax ID(s) 1028745

Special Collections JCM Literature strains

History JCM <-- C. O. Jeon SC17.

Links

Aestuariibaculum suncheonense KACC 16186 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393818

JCM 17789

@ref 20215

Last LPSN update 2026-05-29 08:38:10

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aestuariibaculum

Species Aestuariibaculum suncheonense

Full scientific name Aestuariibaculum suncheonense Jeong et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30515	negative	2.5 µm	0.6 µm	rod-shaped

Pigmentation

30515

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30515	positive	growth	05-40
30515	positive	optimum	27.5
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30515	positive	optimum	7
30515	positive	growth	6-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30515	aerobe
125439	obligate aerobe	93.48

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30515	NaCl	positive	growth	01-08 %
30515	NaCl	positive	optimum	1.5 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30515	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
30515	30089 ChEBI	acetate	+	carbon source
30515	16449 ChEBI	alanine	+	carbon source
30515	40585 ChEBI	alpha-cyclodextrin	+	carbon source
30515	22599 ChEBI	arabinose	+	carbon source
30515	22653 ChEBI	asparagine	+	carbon source
30515	35391 ChEBI	aspartate	+	carbon source
30515	23652 ChEBI	dextrin	+	carbon source
30515	4853 ChEBI	esculin	+	hydrolysis
30515	28757 ChEBI	fructose	+	carbon source
30515	28260 ChEBI	galactose	+	carbon source
30515	17234 ChEBI	glucose	+	carbon source
30515	29987 ChEBI	glutamate	+	carbon source
30515	27570 ChEBI	histidine	+	carbon source
30515	21217 ChEBI	L-alaninamide	+	carbon source
30515	24996 ChEBI	lactate	+	carbon source
30515	17716 ChEBI	lactose	+	carbon source
30515	17306 ChEBI	maltose	+	carbon source
30515	37684 ChEBI	mannose	+	carbon source
30515	28053 ChEBI	melibiose	+	carbon source
30515	506227 ChEBI	N-acetylglucosamine	+	carbon source
30515	17632 ChEBI	nitrate	+	reduction
30515	18257 ChEBI	ornithine	+	carbon source
30515	28044 ChEBI	phenylalanine	+	carbon source
30515	26271 ChEBI	proline	+	carbon source
30515	16634 ChEBI	raffinose	+	carbon source
30515	17822 ChEBI	serine	+	carbon source
30515	17992 ChEBI	sucrose	+	carbon source
30515	26986 ChEBI	threonine	+	carbon source
30515	53424 ChEBI	tween 20	+	carbon source
30515	16704 ChEBI	uridine	+	carbon source
30515	27248 ChEBI	urocanic acid	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30515	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30515	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
30515	acid phosphatase	+	3.1.3.2
30515	alkaline phosphatase	+	3.1.3.1
30515	alpha-galactosidase	+	3.2.1.22
30515	catalase	+	1.11.1.6
30515	cytochrome oxidase	+	1.9.3.1
30515	gelatinase	+
30515	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
30515	marine sediment
67770	Sediment of a tidal flat in the Suncheon bay	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954147v1 assembly for Aestuariibaculum suncheonense JCM 17789	contig	GCA_039541475	1028745	75.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30515	Aestuariibaculum suncheonense strain SC17 16S ribosomal RNA gene, partial sequence	JF751043	1482		1028745

GC content

@ref	GC-content (mol%)	Method
30515	46.4
67770	46.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954147v1 assembly for Aestuariibaculum suncheonense JCM 17789
NCBI: GCA_039541475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	89.85	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.48	no
125439	motility	BacteriaNetⓘ	yes	54.78	no
125439	spore_formation	BacteriaNetⓘ	no	80.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariibaculum sediminum sp. nov., a marine bacterium isolated from a tidal flat in Zhoushan.	Wu ZC, Zhang XY, Sun C, Xu L, Fu GY, Xu XW	Arch Microbiol	10.1007/s00203-021-02262-1	2021
Phylogeny	Aestuariibaculum marinum sp. nov., a marine bacterium isolated from seawater in South Korea.	Choi J, Lee D, Jang JH, Cha S, Seo T	J Microbiol	10.1007/s12275-018-8134-z	2018
Phylogeny	Aestuariibaculum scopimerae sp. nov., isolated from the globular ghost crab, Scopimera globosa.	Lee JB, Kim BC, Kim H, Bae KS, Yang JH, Chun YY, Park SJ, Park DS	J Microbiol	10.1007/s12275-013-3499-5	2013
Phylogeny	Aquibacter zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from surface seawater, and emended descriptions of the genera Aestuariibaculum and Gaetbulibacter.	Hameed A, Shahina M, Lin SY, Lai WA, Hsu YH, Liu YC, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.052621-0	2013
Phylogeny	Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana.	Jeong SH, Park MS, Jin HM, Lee K, Park W, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.037846-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26847	IJSEM 332 2013 ( DOI 10.1099/ijs.0.037846-0 , PubMed 22427453 )
#30515	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26847
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Aestuariibaculum suncheonense (KACC 16186, JCM 17789, SC 17)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039541475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media