Name: Aestuariibaculum suncheonense KACC 16186
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133791

Type strain:

Species: Aestuariibaculum suncheonense

Culture col. no.: KACC 16186, JCM 17789, SC 17

Strain history: C. O. Jeon SC17.

NCBI tax ID(s): 1028745 (species)

Section

Aestuariibaculum suncheonense KACC 16186 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aestuariibaculum*
	Species	**Aestuariibaculum suncheonense**
	Full Scientific Name (LPSN)	Aestuariibaculum suncheonense Jeong et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30515]	Gram stain	negative

[Ref.: #30515]	Cell length	2.5 µm

[Ref.: #30515]	Cell width	0.6 µm

[Ref.: #30515]	Cell shape	rod-shaped

[Ref.: #30515]	Motility	no

[Ref.: #30515]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30515]	growth	05-40 °C
[Ref.: #30515]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30515]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30515]			optimum	7
[Ref.: #30515]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30515]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30515]		NaCl		growth	01-08	%
[Ref.: #30515]		NaCl		optimum	1.5	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30515]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30515]	acetate ChEBI	+	carbon source
[Ref.: #30515]	alanine ChEBI	+	carbon source
[Ref.: #30515]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30515]	arabinose ChEBI	+	carbon source
[Ref.: #30515]	asparagine ChEBI	+	carbon source
[Ref.: #30515]	aspartate ChEBI	+	carbon source
[Ref.: #30515]	dextrin ChEBI	+	carbon source
[Ref.: #30515]	esculin ChEBI	+	hydrolysis
[Ref.: #30515]	fructose ChEBI	+	carbon source
[Ref.: #30515]	galactose ChEBI	+	carbon source
[Ref.: #30515]	glucose ChEBI	+	carbon source
[Ref.: #30515]	glutamate ChEBI	+	carbon source
[Ref.: #30515]	histidine ChEBI	+	carbon source
[Ref.: #30515]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30515]	lactate ChEBI	+	carbon source
[Ref.: #30515]	lactose ChEBI	+	carbon source
[Ref.: #30515]	maltose ChEBI	+	carbon source
[Ref.: #30515]	mannose ChEBI	+	carbon source
[Ref.: #30515]	melibiose ChEBI	+	carbon source
[Ref.: #30515]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30515]	nitrate ChEBI	+	reduction
[Ref.: #30515]	ornithine ChEBI	+	carbon source
[Ref.: #30515]	phenylalanine ChEBI	+	carbon source
[Ref.: #30515]	proline ChEBI	+	carbon source
[Ref.: #30515]	raffinose ChEBI	+	carbon source
[Ref.: #30515]	serine ChEBI	+	carbon source
[Ref.: #30515]	sucrose ChEBI	+	carbon source
[Ref.: #30515]	threonine ChEBI	+	carbon source
[Ref.: #30515]	tween 20 ChEBI	+	carbon source
[Ref.: #30515]	uridine ChEBI	+	carbon source
[Ref.: #30515]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30515]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30515]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #30515]	acid phosphatase	+	3.1.3.2
[Ref.: #30515]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30515]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30515]	catalase	+	1.11.1.6
[Ref.: #30515]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30515]	gelatinase	+
[Ref.: #30515]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30515]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Sediment of a tidal flat in the Suncheon bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30515]	Aestuariibaculum suncheonense strain SC17 16S ribosomal RNA gene, partial sequence	JF751043	1482	GenBank	1028745 tax ID

[Ref.: #30515]	GC-content	46.4 mol%
[Ref.: #67770]	GC-content	46.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30515]

Culture collection no.

KACC 16186, JCM 17789, SC 17

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariibaculum sediminum sp. nov., a marine bacterium isolated from a tidal flat in Zhoushan.	Wu ZC, Zhang XY, Sun C, Xu L, Fu GY, Xu XW	Arch Microbiol	10.1007/s00203-021-02262-1	2021	*
Phylogeny	Aestuariibaculum marinum sp. nov., a marine bacterium isolated from seawater in South Korea.	Choi J, Lee D, Jang JH, Cha S, Seo T	J Microbiol	10.1007/s12275-018-8134-z	2018	*
Phylogeny	Aestuariibaculum scopimerae sp. nov., isolated from the globular ghost crab, Scopimera globosa.	Lee JB, Kim BC, Kim H, Bae KS, Yang JH, Chun YY, Park SJ, Park DS	J Microbiol	10.1007/s12275-013-3499-5	2013	*
Phylogeny	Aquibacter zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from surface seawater, and emended descriptions of the genera Aestuariibaculum and Gaetbulibacter.	Hameed A, Shahina M, Lin SY, Lai WA, Hsu YH, Liu YC, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.052621-0	2013	*
Phylogeny	Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana.	Jeong SH, Park MS, Jin HM, Lee K, Park W, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.037846-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30515

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26847 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#26847

IJSEM 332 2013 ( DOI 10.1099/ijs.0.037846-0 , PubMed 22427453 )

* These data were automatically processed and therefore are not curated

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