Name: Gluconacetobacter asukensis K8617-1- 1b
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133744

Type strain:

Species: Gluconacetobacter asukensis

Strain Designation: K8617-1- 1b

Culture col. no.: JCM 17772, NCIMB 14759, BCRC 80741, LMG 27724

Strain history: J. Sugiyama K8617-1-1b.

NCBI tax ID(s): 1017181 (species)

SI-ID 380878

JCM 17772, NCIMB 14759, LMG 27724

Special Collections

Other strains from Gluconacetobacter asukensis

Section

Gluconacetobacter asukensis K8617-1- 1b is an aerobe, Gram-negative, motile bacterium that was isolated from Plaster wall.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconacetobacter*
	Species	**Gluconacetobacter asukensis**
	Full Scientific Name (LPSN)	Gluconacetobacter asukensis Tazato et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30374]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.994

[Ref.: #30374]	Cell length	1.6 µm

[Ref.: #30374]	Cell width	0.85 µm

[Ref.: #30374]	Cell shape	rod-shaped

[Ref.: #30374]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30374]	growth	15-30 °C
[Ref.: #30374]	optimum	25 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30374]			growth	3-6.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30374]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30374]	ethanol ChEBI	+	carbon source
[Ref.: #30374]	fructose ChEBI	+	carbon source
[Ref.: #30374]	glucose ChEBI	+	carbon source
[Ref.: #30374]	mannitol ChEBI	+	carbon source
[Ref.: #30374]	ribose ChEBI	+	carbon source
[Ref.: #30374]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30374]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30374]	Sample type/isolated from	Plaster wall

[Ref.: #67770]	Sample type/isolated from	Brown viscous gel on north-east area of the ceiling in the stone chamber of the Kitora Tumulus in Asuka Village
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nara Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB627120 (>99% sequence identity) for Gluconacetobacter from Microbeatlas

Aquatic Samples	144
Soil Samples	360
Animal Samples	740
Plant Samples	246
Total Samples	1490

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30374]	Gluconacetobacter asukensis gene for 16S rRNA, partial sequence, strain: K8617-1-1b	AB627120	1418	GenBank ENA	1017181 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconacetobacter asukensis LMG 27724	GCA_014174375	contig	GenBank ENA	1017181 tax ID
[Ref.: #66792]	Gluconacetobacter asukensis strain LMG 27724	1017181.4	wgs	PATRIC	1017181 tax ID	*

[Ref.: #30374]	GC-content	65.4 mol%
[Ref.: #67770]	GC-content	65.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconacetobacter asukensis strain LMG 27724 PATRIC: 1017181.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconacetobacter asukensis strain LMG 27724 PATRIC: 1017181.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.333	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.18	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.976	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.629	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	68.677	no

Availability in culture collections External links

[Ref.: #30374]

Culture collection no.

JCM 17772, NCIMB 14759, BCRC 80741, LMG 27724

[Ref.: #91581]

SI-ID 380878

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gluconacetobacter tumulicola sp. nov. and Gluconacetobacter asukensis sp. nov., isolated from the stone chamber interior of the Kitora Tumulus.	Tazato N, Nishijima M, Handa Y, Kigawa R, Sano C, Sugiyama J	Int J Syst Evol Microbiol	10.1099/ijs.0.034595-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30374

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26714 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91581

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380878.1 )

#26714

IJSEM 2032 2012 ( DOI 10.1099/ijs.0.034595-0 , PubMed 22038998 )

* These data were automatically processed and therefore are not curated

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Gluconacetobacter asukensis strain LMG 27724

Gluconacetobacter asukensis strain LMG 27724

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