Gluconacetobacter tumulicola (JCM 17774, NCIMB 14760, K5929-2-1b)

Name: Gluconacetobacter tumulicola (JCM 17774, NCIMB 14760, K5929-2-1b)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133743

Type strain

Strain Designation K5929-2-1b

Culture col. no. JCM 17774 NCIMB 14760 K5929-2-1b LMG 27725 BCRC 80742

NCBI tax ID(s) 1017177

Special Collections JCM Literature strains

History J. Sugiyama K5929-2-1b.

Links

Gluconacetobacter tumulicola K5929-2-1b is an aerobe, Gram-negative, motile bacterium that was isolated from Plaster wall.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 380880

BCRC 80742,JCM 17774,NCIMB 14760,LMG 27725

@ref 20215

Last LPSN update 2026-02-09 11:32:01

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Gluconacetobacter

Species Gluconacetobacter tumulicola

Full scientific name Gluconacetobacter tumulicola Tazato et al. 2012

BacDive ID	Other strains from **Gluconacetobacter tumulicola** (4)	Type strain
162109	G. tumulicola JCM 17773
162110	G. tumulicola JCM 17775
162111	G. tumulicola JCM 17776
162112	G. tumulicola JCM 17777

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30374	negative	1.6 µm	0.75 µm	rod-shaped
125439	negative				99.6
125438	negative				95.771

Pigmentation

30374

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30374	positive	growth	15-30
30374	positive	optimum	25
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30374	positive	growth	3-6.8	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30374	aerobe
125439	obligate aerobe	91.6

Spore formation

@ref	Spore formation	Confidence
125439		96.9

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30374	16236 ChEBI	ethanol	+	carbon source
30374	28757 ChEBI	fructose	+	carbon source
30374	17234 ChEBI	glucose	+	carbon source
30374	29864 ChEBI	mannitol	+	carbon source
30374	17268 ChEBI	myo-inositol	+	carbon source
30374	33942 ChEBI	ribose	+	carbon source
30374	30911 ChEBI	sorbitol	+	carbon source
30374	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30374	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Built environment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
30374	Plaster wall
67770	Black viscous substance in a plaster hole on central area of the ceiling in the stone chamber of the Kitora Tumulus in Asuka Village	Nara Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB627116 (>99% sequence identity) for Gluconacetobacter from Microbeatlas

Aquatic Samples	144
Soil Samples	360
Animal Samples	740
Plant Samples	246
Total Samples	1490

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1417421v1 assembly for Gluconacetobacter tumulicola LMG 27725	contig	GCA_014174215	1017177.4	8065941540	1017177	53.17
124043	ASM3954137v1 assembly for Gluconacetobacter tumulicola JCM 17774	contig	GCA_039541375			1017177	49.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30374	Gluconacetobacter tumulicola gene for 16S rRNA, partial sequence, strain: K5929-2-1b	AB627116	1418		1017177

GC content

@ref	GC-content (mol%)	Method
30374	64.7
67770	64.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gluconacetobacter tumulicola LMG 27725
NCBI: GCA_014174215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	yes	82.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gluconacetobacter tumulicola strain LMG 27725
PATRIC: 1017177.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.77	yes
125438	anaerobic	anaerobicⓘ	no	91.11	yes
125438	spore-forming	spore-formingⓘ	no	83.50	no
125438	aerobic	aerobicⓘ	yes	83.69	yes
125438	thermophilic	thermophileⓘ	no	97.71	yes
125438	flagellated	motile2+ⓘ	yes	67.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome analysis suggests the bacterial family Acetobacteraceae is a source of undiscovered specialized metabolites.	Guzman J, Vilcinskas A.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01676-7	2022
Phylogeny	Gluconacetobacter tumulicola sp. nov. and Gluconacetobacter asukensis sp. nov., isolated from the stone chamber interior of the Kitora Tumulus.	Tazato N, Nishijima M, Handa Y, Kigawa R, Sano C, Sugiyama J	Int J Syst Evol Microbiol	10.1099/ijs.0.034595-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26714	IJSEM 2032 2012 ( DOI 10.1099/ijs.0.034595-0 , PubMed 22038998 )
#30374	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26714
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gluconacetobacter tumulicola (JCM 17774, NCIMB 14760, K5929-2-1b)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014174215

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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