Name: Gluconacetobacter tumulicola K5929-2-1b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133743

Type strain:

Species: Gluconacetobacter tumulicola

Strain Designation: K5929-2-1b

Culture col. no.: JCM 17774, NCIMB 14760, BCRC 80742, LMG 27725

Strain history: J. Sugiyama K5929-2-1b.

NCBI tax ID(s): 1017177 (species)

SI-ID 380880

JCM 17774, NCIMB 14760, LMG 27725

Other strains from Gluconacetobacter tumulicola

G. tumulicola JCM 17773
G. tumulicola JCM 17775
G. tumulicola JCM 17776
G. tumulicola JCM 17777

Section

Gluconacetobacter tumulicola K5929-2-1b is an aerobe, Gram-negative, motile bacterium that was isolated from Plaster wall.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconacetobacter*
	Species	**Gluconacetobacter tumulicola**
	Full Scientific Name (LPSN)	Gluconacetobacter tumulicola Tazato et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30374]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #30374]	Cell length	1.6 µm

[Ref.: #30374]	Cell width	0.75 µm

[Ref.: #30374]	Cell shape	rod-shaped

[Ref.: #30374]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.735

[Ref.: #30374]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30374]	growth	15-30 °C
[Ref.: #30374]	optimum	25 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30374]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30374]			growth	3-6.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30374]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30374]	ethanol ChEBI	+	carbon source
[Ref.: #30374]	fructose ChEBI	+	carbon source
[Ref.: #30374]	glucose ChEBI	+	carbon source
[Ref.: #30374]	mannitol ChEBI	+	carbon source
[Ref.: #30374]	myo-inositol ChEBI	+	carbon source
[Ref.: #30374]	ribose ChEBI	+	carbon source
[Ref.: #30374]	sorbitol ChEBI	+	carbon source
[Ref.: #30374]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30374]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30374]	Sample type/isolated from	Plaster wall

[Ref.: #67770]	Sample type/isolated from	Black viscous substance in a plaster hole on central area of the ceiling in the stone chamber of the Kitora Tumulus in Asuka Village
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nara Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB627116 (>99% sequence identity) for Gluconacetobacter from Microbeatlas

Aquatic Samples	144
Soil Samples	360
Animal Samples	740
Plant Samples	246
Total Samples	1490

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30374]	Gluconacetobacter tumulicola gene for 16S rRNA, partial sequence, strain: K5929-2-1b	AB627116	1418	GenBank	1017177 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconacetobacter tumulicola LMG 27725	GCA_014174215	contig	GenBank	1017177 tax ID
[Ref.: #66792]	Gluconacetobacter tumulicola strain LMG 27725	1017177.4	wgs	PATRIC	1017177 tax ID	*

[Ref.: #30374]	GC-content	64.7 mol%
[Ref.: #67770]	GC-content	64.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconacetobacter tumulicola strain LMG 27725 PATRIC: 1017177.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconacetobacter tumulicola strain LMG 27725 PATRIC: 1017177.4
[Ref.: #69480]	motile	yes	88.684	yes
[Ref.: #69480]	flagellated	no	79.361	no
[Ref.: #69480]	gram-positive	no	97.756	yes
[Ref.: #69480]	anaerobic	no	98.248	yes
[Ref.: #69480]	aerobic	yes	83.625	yes
[Ref.: #69480]	halophile	no	95.023	no
[Ref.: #69480]	spore-forming	no	95.181	no
[Ref.: #69480]	thermophile	no	97.707	no
[Ref.: #69480]	glucose-util	yes	91.372	yes
[Ref.: #69480]	glucose-ferment	no	89.389	no

Availability in culture collections External links

[Ref.: #30374]

Culture collection no.

JCM 17774, NCIMB 14760, BCRC 80742, LMG 27725

[Ref.: #91580]

SI-ID 380880

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gluconacetobacter tumulicola sp. nov. and Gluconacetobacter asukensis sp. nov., isolated from the stone chamber interior of the Kitora Tumulus.	Tazato N, Nishijima M, Handa Y, Kigawa R, Sano C, Sugiyama J	Int J Syst Evol Microbiol	10.1099/ijs.0.034595-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30374

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26714 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380880.1 )

#26714

IJSEM 2032 2012 ( DOI 10.1099/ijs.0.034595-0 , PubMed 22038998 )

* These data were automatically processed and therefore are not curated

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Gluconacetobacter tumulicola strain LMG 27725

Gluconacetobacter tumulicola strain LMG 27725

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