Name: Bradyrhizobium huanghuaihaiense LMG 26136
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133742

Type strain:

Species: Bradyrhizobium huanghuaihaiense

Culture col. no.: LMG 26136, CGMCC 1.10948, HAMBI 3180, CCBAU 23303

NCBI tax ID(s): 990078 (species)

SI-ID 36579

LMG 26136, CGMCC 1.10948, HAMBI 3180

Section

Bradyrhizobium huanghuaihaiense LMG 26136 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Species	**Bradyrhizobium huanghuaihaiense**
	Full Scientific Name (LPSN)	Bradyrhizobium huanghuaihaiense Zhang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30372]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.974

[Ref.: #30372]	Cell length	1.35 µm

[Ref.: #30372]	Cell width	0.46 µm

[Ref.: #30372]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	yes Confidence in %97.086

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30372]			growth	10-28 °C
[Ref.: #30372]			optimum	28 °C

[Ref.: #30372]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30372]			optimum	7
[Ref.: #30372]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30372]

Oxygen tolerance

aerobe

[Ref.: #30372]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.965

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30372]	arabinose ChEBI	+	carbon source
[Ref.: #30372]	fructose ChEBI	+	carbon source
[Ref.: #30372]	galactose ChEBI	+	carbon source
[Ref.: #30372]	mannose ChEBI	+	carbon source
[Ref.: #30372]	melibiose ChEBI	+	carbon source
[Ref.: #30372]	proline ChEBI	+	carbon source
[Ref.: #30372]	ribose ChEBI	+	carbon source
[Ref.: #30372]	sucrose ChEBI	+	carbon source
[Ref.: #30372]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30372]		catalase	+	1.11.1.6
[Ref.: #30372]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30372]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ231463 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	688
Soil Samples	1424
Animal Samples	2839
Plant Samples	203
Total Samples	5154

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30372]	Bradyrhizobium huanghuaihaiense strain CCBAU 23303 16S ribosomal RNA gene, partial sequence	HQ231463	1348	GenBank	990078 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bradyrhizobium huanghuaihaiense CGMCC 1.10948	GCA_007830635	scaffold	GenBank	990078 tax ID	*
[Ref.: #66792]	Bradyrhizobium huanghuaihaiense strain CGMCC 1.10948	990078.3	wgs	PATRIC	990078 tax ID	*
[Ref.: #66792]	Bradyrhizobium huanghuaihaiense CGMCC 1.10948	2596583587	draft	JGI IMG/M	990078 tax ID	*

[Ref.: #30372]

GC-content

61.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bradyrhizobium huanghuaihaiense CGMCC 1.10948 NCBI: GCA_007830635.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bradyrhizobium huanghuaihaiense CGMCC 1.10948 NCBI: GCA_007830635.1
[Ref.: #69480]	motile	yes	89.13	no
[Ref.: #69480]	flagellated	no	60.074	no
[Ref.: #69480]	gram-positive	no	98.048	no
[Ref.: #69480]	anaerobic	no	97.751	yes
[Ref.: #69480]	aerobic	yes	92.901	yes
[Ref.: #69480]	halophile	no	96.007	no
[Ref.: #69480]	spore-forming	no	92.782	no
[Ref.: #69480]	thermophile	no	99.541	yes
[Ref.: #69480]	glucose-util	yes	90.352	no
[Ref.: #69480]	glucose-ferment	no	89.716	no

Availability in culture collections External links

[Ref.: #30372]

Culture collection no.

LMG 26136, CGMCC 1.10948, HAMBI 3180, CCBAU 23303

[Ref.: #91579]

SI-ID 36579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bradyrhizobium huanghuaihaiense sp. nov., an effective symbiotic bacterium isolated from soybean (Glycine max L.) nodules.	Zhang YM, Li Y, Chen WF, Wang ET, Sui XH, Li QQ, Zhang YZ, Zhou YG, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.034546-0	2011	*
Phylogeny	Bradyrhizobium manausense sp. nov., isolated from effective nodules of Vigna unguiculata grown in Brazilian Amazonian rainforest soils.	Silva FV, De Meyer SE, Simoes-Araujo JL, Barbe TDC, Xavier GR, O'Hara G, Ardley JK, Rumjanek NG, Willems A, Zilli JE	Int J Syst Evol Microbiol	10.1099/ijs.0.061259-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30372

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26712 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91579

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36579.1 )

#26712

IJSEM 1951 2012 ( DOI 10.1099/ijs.0.034546-0 , PubMed 22003042 )

* These data were automatically processed and therefore are not curated

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Bradyrhizobium huanghuaihaiense CGMCC 1.10948

Bradyrhizobium huanghuaihaiense CGMCC 1.10948

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