Name: Gryllotalpicola daejeonensis RU-04
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133745

Type strain:

Species: Gryllotalpicola daejeonensis

Strain Designation: RU-04

Culture col. no.: KCTC 13809, JCM 17590

Strain history: <- KS Bae, KRIBB

NCBI tax ID(s): 993087 (species)

Special Collections

Section

Gryllotalpicola daejeonensis RU-04 is an aerobe, Gram-positive, motile bacterium that was isolated from Cricket.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Gryllotalpicola*
	Species	**Gryllotalpicola daejeonensis**
	Full Scientific Name (LPSN)	Gryllotalpicola daejeonensis Kim et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30379]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #30379]	Cell length	0.85 µm

[Ref.: #30379]	Cell width	0.35 µm

[Ref.: #30379]	Cell shape	rod-shaped

[Ref.: #30379]	Motility	yes

[Ref.: #30379]	Flagellum arrangement	gliding

[Ref.: #30379]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30379]	growth	25-37 °C
[Ref.: #30379]	optimum	27.5 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #30379]			optimum	6
[Ref.: #30379]			growth	5.5-6.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30379]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30379]		NaCl		growth	0-2	%
[Ref.: #30379]		NaCl		optimum	1	%

[Ref.: #67770]	Observation	quinones: MK-11, MK-12
[Ref.: #67771]	Observation	quinones: MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30379]	dextrin ChEBI	+	carbon source
[Ref.: #30379]	galactose ChEBI	+	carbon source
[Ref.: #30379]	gluconate ChEBI	+	carbon source
[Ref.: #30379]	maltose ChEBI	+	carbon source
[Ref.: #30379]	sorbitol ChEBI	+	carbon source
[Ref.: #30379]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30379]		alpha-galactosidase	+	3.2.1.22
[Ref.: #30379]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30379]	Sample type/isolated from	Cricket

[Ref.: #67770]	Sample type/isolated from	Gut of the African mole cricket, Gryllotalpa africana
[Ref.: #67770]	Host species	Gryllotalpa africana

[Ref.: #67771]	Sample type/isolated from	from the gut of the African mole cricket
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ832502 (>99% sequence identity) for Gryllotalpicola daejeonensis from Microbeatlas

Aquatic Samples	68
Soil Samples	76
Animal Samples	63
Plant Samples	193
Total Samples	400

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30379]	Gryllotalpicola daejeonensis strain RU-04 16S ribosomal RNA gene, partial sequence	HQ832502	1424	GenBank ENA	993087 tax ID

[Ref.: #30379]	GC-content	70.2 mol%
[Ref.: #67770]	GC-content	70.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #30379]

Culture collection no.

KCTC 13809, JCM 17590

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gryllotalpicola gen. nov., with descriptions of Gryllotalpicola koreensis sp. nov., Gryllotalpicola daejeonensis sp. nov. and Gryllotalpicola kribbensis sp. nov. from the gut of the African mole cricket, Gryllotalpa africana, and reclassification of Curtobacterium ginsengisoli as Gryllotalpicola ginsengisoli comb. nov.	Kim H, Park DS, Oh HW, Lee KH, Chung DH, Park HY, Park HM, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.034678-0	2011	*
Phylogeny	Gryllotalpicola protaetiae sp. nov., isolated from insect Protaetia brevitarsis seulensis, and emended descriptions of the genus Gryllotalpicola and the species Gryllotalpicola soli.	Cho H, Heo J, Hamada M, Tamura T, Saitou S, Kim JS, Hong SB, Kim SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003767	2020	*
Phylogeny	Gryllotalpicola soli sp. nov., isolated from soil.	Moon JY, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Yoon JH, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.067710-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30379

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26718 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26718

IJSEM 2363 2012 ( DOI 10.1099/ijs.0.034678-0 , PubMed 22140167 )

* These data were automatically processed and therefore are not curated

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