Gryllotalpicola daejeonensis (KCTC 13809, JCM 17590, RU-04)

Name: Gryllotalpicola daejeonensis (KCTC 13809, JCM 17590, RU-04)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133745

Type strain

Strain Designation RU-04

Culture col. no. KCTC 13809 JCM 17590 RU-04

NCBI tax ID(s) 993087

Special Collections JCM KCTC Literature strains

History JCM <-- K. S. Bae RU-04. KCTC <- KS Bae, KRIBB

Links

Gryllotalpicola daejeonensis RU-04 is an aerobe, Gram-positive, motile bacterium that was isolated from Cricket.

Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27215

KCTC 13809,JCM 17590

@ref 20215

Last LPSN update 2026-05-29 08:38:10

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Gryllotalpicola

Species Gryllotalpicola daejeonensis

Full scientific name Gryllotalpicola daejeonensis Kim et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
30379	positive	0.85 µm	0.35 µm	rod-shaped	gliding
67771	positive
125439	positive					94.3

Pigmentation

30379

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30379	positive	growth	25-37
30379	positive	optimum	27.5
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
30379	positive	optimum	6
30379	positive	growth	5.5-6.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30379	aerobe
67771	aerobe
125439	obligate aerobe	99.331

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30379	NaCl	positive	growth	0-2 %
30379	NaCl	positive	optimum	1 %

Observation

@ref	Observation
67770	quinones: MK-11, MK-12
67771	quinones: MK-11

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30379	23652 ChEBI	dextrin	+	carbon source
30379	28260 ChEBI	galactose	+	carbon source
30379	24265 ChEBI	gluconate	+	carbon source
30379	17306 ChEBI	maltose	+	carbon source
30379	30911 ChEBI	sorbitol	+	carbon source
30379	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30379	alpha-galactosidase	+	3.2.1.22
30379	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Host species
30379	Cricket
67770	Gut of the African mole cricket, Gryllotalpa africana				Gryllotalpa africana
67771	from the gut of the African mole cricket	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ832502 (>99% sequence identity) for Gryllotalpicola daejeonensis from Microbeatlas

Aquatic Samples	68
Soil Samples	76
Animal Samples	63
Plant Samples	193
Total Samples	400

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953814v1 assembly for Gryllotalpicola daejeonensis JCM 17590	scaffold	GCA_039538145	993087	77.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30379	Gryllotalpicola daejeonensis strain RU-04 16S ribosomal RNA gene, partial sequence	HQ832502	1424		993087

GC content

@ref	GC-content (mol%)	Method
30379	70.2
67770	70.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953814v1 assembly for Gryllotalpicola daejeonensis JCM 17590
NCBI: GCA_039538145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.33	no
125439	motility	BacteriaNetⓘ	no	70.94	no
125439	gram_stain	BacteriaNetⓘ	positive	94.30	no
125439	spore_formation	BacteriaNetⓘ	no	88.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gryllotalpicola gen. nov., with descriptions of Gryllotalpicola koreensis sp. nov., Gryllotalpicola daejeonensis sp. nov. and Gryllotalpicola kribbensis sp. nov. from the gut of the African mole cricket, Gryllotalpa africana, and reclassification of Curtobacterium ginsengisoli as Gryllotalpicola ginsengisoli comb. nov.	Kim H, Park DS, Oh HW, Lee KH, Chung DH, Park HY, Park HM, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.034678-0	2011
Phylogeny	Gryllotalpicola protaetiae sp. nov., isolated from insect Protaetia brevitarsis seulensis, and emended descriptions of the genus Gryllotalpicola and the species Gryllotalpicola soli.	Cho H, Heo J, Hamada M, Tamura T, Saitou S, Kim JS, Hong SB, Kim SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003767	2020
Phylogeny	Gryllotalpicola soli sp. nov., isolated from soil.	Moon JY, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Yoon JH, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.067710-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26718	IJSEM 2363 2012 ( DOI 10.1099/ijs.0.034678-0 , PubMed 22140167 )
#30379	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26718
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gryllotalpicola daejeonensis (KCTC 13809, JCM 17590, RU-04)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039538145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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