Name: Gaetbulibacter aestuarii KYW382
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133673

Type strain:

Species: Gaetbulibacter aestuarii

Strain Designation: KYW382

Culture col. no.: KCTC 23303, JCM 17455

Strain history: <- CN Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 1502358 (species)

Section

Gaetbulibacter aestuarii KYW382 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Gaetbulibacter*
	Species	**Gaetbulibacter aestuarii**
	Full Scientific Name (LPSN)	Gaetbulibacter aestuarii Park et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30061]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30061]	Cell length	1.5-4.0 µm

[Ref.: #30061]	Cell width	0.3 µm

[Ref.: #30061]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30061]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #30061]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30061]	growth	10-40 °C
[Ref.: #30061]	optimum	25-35 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #30061]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30061]			optimum	7
[Ref.: #30061]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30061]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30061]		NaCl		growth	1-9	%
[Ref.: #30061]		NaCl		optimum	2-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30061]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30061]	asparagine ChEBI	+	carbon source
[Ref.: #30061]	aspartate ChEBI	+	carbon source
[Ref.: #30061]	cellobiose ChEBI	+	carbon source
[Ref.: #30061]	dextrin ChEBI	+	carbon source
[Ref.: #30061]	esculin ChEBI	+	hydrolysis
[Ref.: #30061]	fructose ChEBI	+	carbon source
[Ref.: #30061]	galactose ChEBI	+	carbon source
[Ref.: #30061]	glucose ChEBI	+	carbon source
[Ref.: #30061]	glutamate ChEBI	+	carbon source
[Ref.: #30061]	lactose ChEBI	+	carbon source
[Ref.: #30061]	maltose ChEBI	+	carbon source
[Ref.: #30061]	mannose ChEBI	+	carbon source
[Ref.: #30061]	melibiose ChEBI	+	carbon source
[Ref.: #30061]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30061]	ornithine ChEBI	+	carbon source
[Ref.: #30061]	proline ChEBI	+	carbon source
[Ref.: #30061]	raffinose ChEBI	+	carbon source
[Ref.: #30061]	rhamnose ChEBI	+	carbon source
[Ref.: #30061]	sucrose ChEBI	+	carbon source
[Ref.: #30061]	threonine ChEBI	+	carbon source
[Ref.: #30061]	trehalose ChEBI	+	carbon source
[Ref.: #30061]	tween 20 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30061]	catalase	+	1.11.1.6
[Ref.: #30061]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30061]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30061]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	the shallow coastal region of Gwangyang Bay, South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	34.9000°/128.7170°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU552681 (>99% sequence identity) for Gaetbulibacter aestuarii subclade from Microbeatlas

Aquatic Samples	90
Soil Samples	9
Animal Samples
Plant Samples	16
Total Samples	115

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30061]	Gaetbulibacter aestuarii strain KYW382 16S ribosomal RNA gene, partial sequence	GU552681	1458	GenBank	1502358 tax ID

[Ref.: #30061]	GC-content	32.4 mol%
[Ref.: #67770]	GC-content	32.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30061]

Culture collection no.

KCTC 23303, JCM 17455

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gaetbulibacter aquiaggeris sp. nov., a member of the Flavobacteriaceae isolated from seawater.	Jung YT, Lee JS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000845	2015	*
Phylogeny	Gaetbulibacter lutimaris sp. nov., isolated from a tidal flat sediment.	Yoon JH, Lee SY, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.040352-0	2012	*
Phylogeny	Gaetbulibacter aestuarii sp. nov., isolated from shallow coastal seawater, and emended description of the genus Gaetbulibacter.	Park SC, Choe HN, Baik KS, Lee KH, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.028944-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30061

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26421 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26421

IJSEM 150 2012 ( DOI 10.1099/ijs.0.028944-0 , PubMed 21357459 )

* These data were automatically processed and therefore are not curated

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