Name: Corallibacter vietnamensis JCM 17525
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133672

Type strain:

Species: Corallibacter vietnamensis

Culture col. no.: JCM 17525, KCTC 23026, KMM 6217

Strain history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia [7139]

NCBI tax ID(s): 904130 (species)

Special Collections

Section

Corallibacter vietnamensis JCM 17525 is an aerobe, Gram-negative, motile bacterium that was isolated from Coral.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Corallibacter*
	Species	**Corallibacter vietnamensis**
	Full Scientific Name (LPSN)	Corallibacter vietnamensis Kim et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30059]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30059]	Cell length	1.4-3.2 µm

[Ref.: #30059]	Cell width	0.4-0.5 µm

[Ref.: #30059]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30059]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #30059]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #30059]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30059]	growth	10-40 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30059]			optimum	5.5-7.5
[Ref.: #30059]			growth	04-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30059]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30059]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30059]		NaCl		growth	0.5-8	%
[Ref.: #30059]		NaCl		optimum	2-4	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30059]	arabinose ChEBI	+	carbon source
[Ref.: #30059]	citrate ChEBI	+	carbon source
[Ref.: #30059]	esculin ChEBI	+	hydrolysis
[Ref.: #30059]	mannose ChEBI	+	carbon source
[Ref.: #30059]	tween 40 ChEBI	+	carbon source
[Ref.: #30059]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30059]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30059]	catalase	+	1.11.1.6
[Ref.: #30059]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30059]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30059]	Sample type/isolated from	Coral

[Ref.: #67770]	Sample type/isolated from	Coral (Palythoa sp.) from Vanfong Bay
[Ref.: #67770]	Host species	Palythoa sp.
[Ref.: #67770]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From coral `Palythoa` sp.
[Ref.: #67771]	Geographic location (country and/or sea, region)	Vanfong Bay, South China Sea
[Ref.: #67771]	Country	Vietnam
[Ref.: #67771]	Country ISO 3 Code	VNM
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ257254 (>99% sequence identity) for Corallibacter vietnamensis subclade from Microbeatlas

Aquatic Samples	1527
Soil Samples	49
Animal Samples	189
Plant Samples	13
Total Samples	1778

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30059]	Corallibacter vietnamensis strain KMM 6217 16S ribosomal RNA gene, partial sequence	HQ257254	1463	GenBank ENA	904130 tax ID

[Ref.: #30059]	GC-content	34.8 mol%
[Ref.: #67770]	GC-content	34.8 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30059]

Culture collection no.

JCM 17525, KCTC 23026, KMM 6217

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hanstruepera neustonica gen. nov., sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from estuarine water, and emendation of Sediminibacter furfurosus Khan et al. 2007 emend. Kwon et al. 2014, Mangrovimonas yunxiaonensis Li et al. 2013, Antarcticimonas flava Yang et al. 2009 and Hoppeia youngheungensis Kwon et al. 2014.	Hameed A, Shahina M, Lai WA, Lin SY, Liu YC, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.066852-0	2014	*
Phylogeny	Corallibacter vietnamensis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae.	Kim SB, Nedashkovskaya OI, Zhukova NV, Kuchlevskiy AD, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.028928-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30059

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26420 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26420

IJSEM 569 2012 ( DOI 10.1099/ijs.0.028928-0 , PubMed 21515707 )

* These data were automatically processed and therefore are not curated

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