Name: Methylobacterium nodulans CNCMI 2342
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133674

Type strain:

Species: Methylobacterium nodulans

Culture col. no.: CNCMI 2342, LMG 21967, ORS 2060

NCBI tax ID(s): 460265 (strain), 114616 (species)

SI-ID 21083

LMG 21967

Special Collections

Literature strains

Section

Methylobacterium nodulans CNCMI 2342 is an aerobe, Gram-negative, motile bacterium that was isolated from plant endophyte.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium nodulans**
	Full Scientific Name (LPSN)	Methylobacterium nodulans Jourand et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30069]	Gram stain	negative

[Ref.: #30069]	Cell length	1.25 µm

[Ref.: #30069]	Cell width	0.9 µm

[Ref.: #30069]	Cell shape	rod-shaped

[Ref.: #30069]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30069]			growth	30-37 °C
[Ref.: #30069]			optimum	33.5 °C

	pH	Kind of pH		pH
[Ref.: #30069]			optimum	7.15
[Ref.: #30069]			growth	6.8-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30069]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30069]	acetate ChEBI	+	carbon source
[Ref.: #30069]	citrate ChEBI	+	carbon source
[Ref.: #30069]	fructose ChEBI	+	carbon source
[Ref.: #30069]	glucose ChEBI	+	carbon source
[Ref.: #30069]	glutamate ChEBI	+	carbon source
[Ref.: #30069]	nitrate ChEBI	+	reduction
[Ref.: #30069]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30069]	catalase	+	1.11.1.6
[Ref.: #30069]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30069]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30069]	Sample type/isolated from	plant endophyte
* marker position based on {}

Isolation sources categories

#Host	#Other	-
#Host	#Plants	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF220763 (>99% sequence identity) for Methylobacterium nodulans from Microbeatlas

Aquatic Samples	77
Soil Samples	257
Animal Samples	191
Plant Samples	24
Total Samples	549

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30069]	Methylobacterium nodulans strain ORS 2060 16S ribosomal RNA gene, partial sequence	AF220763	1435	GenBank ENA	460265 tax ID
[Ref.: #124043]	Methylobacterium nodulans gene for 16S rRNA, partial sequence, strain: LMG 21967.	AB252199	1434	GenBank ENA	114616 tax ID	*

Availability in culture collections External links

[Ref.: #30069]

Culture collection no.

CNCMI 2342, LMG 21967, ORS 2060

[Ref.: #91552]

SI-ID 21083

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium crusticola sp. nov., isolated from biological soil crusts.	Jia LJ, Zhang KS, Tang K, Meng JY, Zheng C, Feng FY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004020	2020	*
Enzymology	1-Aminocyclopropane-1-carboxylate (ACC) deaminases from Methylobacterium radiotolerans and Methylobacterium nodulans with higher specificity for ACC.	Fedorov DN, Ekimova GA, Doronina NV, Trotsenko YA	FEMS Microbiol Lett	10.1111/1574-6968.12133	2013	*
Metabolism	TonB-dependent receptors in nitrogen-fixing nodulating bacteria.	Lim BL	Microbes Environ	10.1264/jsme2.me10102	2010	*
Phylogeny	Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes.	Sy A, Giraud E, Jourand P, Garcia N, Willems A, de Lajudie P, Prin Y, Neyra M, Gillis M, Boivin-Masson C, Dreyfus B	J Bacteriol	10.1128/JB.183.1.214-220.2001	2001	*
Metabolism	Characterization of recombinant PPi-dependent 6-phosphofructokinases from Methylosinus trichosporium OB3b and Methylobacterium nodulans ORS 2060.	Rozova ON, Khmelenina VN, Trotsenko YA	Biochemistry (Mosc)	10.1134/S0006297912030078	2012	*
Metabolism	Nodulation and plant-growth promotion by methylotrophic bacteria isolated from tropical legumes.	Madhaiyan M, Poonguzhali S, Senthilkumar M, Sundaram S, Sa T	Microbiol Res	10.1016/j.micres.2006.08.009	2006	*
Phylogeny	Methylobacterium nodulans sp. nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria.	Jourand P, Giraud E, Bena G, Sy A, Willems A, Gillis M, Dreyfus B, de Lajudie P	Int J Syst Evol Microbiol	10.1099/ijs.0.02902-0	2004	*
	Role of methylotrophy during symbiosis between Methylobacterium nodulans and Crotalaria podocarpa.	Jourand P, Renier A, Rapior S, Miana de Faria S, Prin Y, Galiana A, Giraud E, Dreyfus B	Mol Plant Microbe Interact	10.1094/MPMI-18-1061	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30069

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26429 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID21083.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#26429

IJSEM 2269 2004 ( DOI 10.1099/ijs.0.02902-0 , PubMed 15545469 )

* These data were automatically processed and therefore are not curated

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