Name: Salinisphaera orenii MK-B5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133667

Type strain:

Species: Salinisphaera orenii

Strain Designation: MK-B5

Culture col. no.: KCTC 23198, JCM 17073

Strain history: S.-J. Park MK-B5.

NCBI tax ID(s): 856731 (species)

Special Collections

Section

Salinisphaera orenii MK-B5 is an aerobe, Gram-negative, motile bacterium that was isolated from Solar saltern.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Salinisphaeraceae*
	Genus	*Salinisphaera*
	Species	**Salinisphaera orenii**
	Full Scientific Name (LPSN)	Salinisphaera orenii Park et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30036]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #30036]	Cell length	1.75 µm

[Ref.: #30036]	Cell width	0.6 µm

[Ref.: #30036]	Cell shape	rod-shaped

[Ref.: #30036]	Motility	yes

[Ref.: #30036]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30036]	growth	10-40 °C
[Ref.: #30036]	optimum	36 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #30036]			optimum	7.25
[Ref.: #30036]			growth	5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30036]

Oxygen tolerance

aerobe

[Ref.: #30036]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30036]		NaCl		growth	5-25	%
[Ref.: #30036]		NaCl		optimum	15	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30036]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30036]	arabinose ChEBI	+	carbon source
[Ref.: #30036]	glycerol ChEBI	+	carbon source
[Ref.: #30036]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30036]	phenylacetate ChEBI	+	carbon source
[Ref.: #30036]	ribose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30036]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30036]	catalase	+	1.11.1.6
[Ref.: #30036]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30036]	Sample type/isolated from	Solar saltern

[Ref.: #67770]	Sample type/isolated from	Sediment of a solar saltern pond in Gomso Bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM137558 (>99% sequence identity) for Salinisphaera from Microbeatlas

Aquatic Samples	1677
Soil Samples	14
Animal Samples	163
Plant Samples	8
Total Samples	1862

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30036]	Salinisphaera orenii MK-B5 16S ribosomal RNA gene, partial sequence	HM137558	1421	GenBank ENA	856730 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinisphaera orenii MK-B5	GCA_003788635	contig	GenBank ENA	856730 tax ID
[Ref.: #66792]	Salinisphaera orenii MK-B5	856730.3	wgs	PATRIC	856730 tax ID	*

[Ref.: #30036]	GC-content	63.4 mol%
[Ref.: #67770]	GC-content	63.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinisphaera orenii MK-B5 PATRIC: 856730.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.613	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.541	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.991	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.554	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	56.828	no

Availability in culture collections External links

[Ref.: #30036]

Culture collection no.

KCTC 23198, JCM 17073

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salifodinibacter halophilus gen. nov., sp. nov., a halophilic gammaproteobacterium in the family Salinisphaeraceae isolated from a salt mine in the Colombian Andes.	Parada-Pinilla MP, Diaz-Cardenas C, Lopez G, Diaz-Riano JI, Gonzalez LN, Restrepo S, Trujillo ME, Baena S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004490	2020	*
Phylogeny	Salinisphaera orenii sp. nov., isolated from a solar saltern.	Park SJ, Cha IT, Kim SJ, Shin KS, Hong Y, Roh DH, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.028647-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30036

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26397 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26397

IJSEM 1877 2012 ( DOI 10.1099/ijs.0.028647-0 , PubMed 21984663 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salinisphaera orenii in external resources:
SILVA
BRENDA
PANGAEA
GBIF