Strain identifier

BacDive ID: 133667

Type strain: Yes

Species: Salinisphaera orenii

Strain Designation: MK-B5

Strain history: S.-J. Park MK-B5.

NCBI tax ID(s): 856731 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30036

BacDive-ID: 133667

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Salinisphaera orenii MK-B5 is an aerobe, Gram-negative, motile bacterium that was isolated from Solar saltern.

NCBI tax id

  • NCBI tax id: 856731
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-J. Park MK-B5.

doi: 10.13145/bacdive133667.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Nevskiales
  • family: Salinisphaeraceae
  • genus: Salinisphaera
  • species: Salinisphaera orenii
  • full scientific name: Salinisphaera orenii Park et al. 2012

@ref: 30036

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Nevskiales

family: Salinisphaeraceae

genus: Salinisphaera

species: Salinisphaera orenii

strain designation: MK-B5

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30036negative1.75 µm0.6 µmrod-shapedyes
69480negative100

pigmentation

  • @ref: 30036
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
30036positivegrowth10-40
30036positiveoptimum36
67770positivegrowth37

culture pH

@refabilitytypepHPH range
30036positivegrowth5-8.5alkaliphile
30036positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 30036
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30036
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30036NaClpositivegrowth5-25 %
30036NaClpositiveoptimum15 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30036581435-dehydro-D-gluconate+carbon source
3003622599arabinose+carbon source
3003617754glycerol+carbon source
30036506227N-acetylglucosamine+carbon source
3003618401phenylacetate+carbon source
3003633942ribose+carbon source

enzymes

@refvalueactivityec
30036alkaline phosphatase+3.1.3.1
30036catalase+1.11.1.6
30036cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
30036Solar saltern
67770Sediment of a solar saltern pond in Gomso BayRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_12341.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_357;96_1636;97_1958;98_9297;99_12341&stattab=map
  • Last taxonomy: Salinisphaera
  • 16S sequence: HM137558
  • Sequence Identity:
  • Total samples: 1862
  • soil counts: 14
  • aquatic counts: 1677
  • animal counts: 163
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 30036
  • description: Salinisphaera orenii MK-B5 16S ribosomal RNA gene, partial sequence
  • accession: HM137558
  • length: 1421
  • database: nuccore
  • NCBI tax ID: 856730

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salinisphaera orenii MK-B5856730.3wgspatric856730
67770Salinisphaera orenii MK-B5GCA_003788635contigncbi856730

GC content

@refGC-contentmethod
3003663.4
6777063.4thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno100yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.613no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes81.541no
69480spore-formingspore-formingAbility to form endo- or exosporesno88.991yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno92.554no
69480flagellatedmotile2+Ability to perform flagellated movementno56.828no

External links

@ref: 30036

culture collection no.: KCTC 23198, JCM 17073

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21984663Salinisphaera orenii sp. nov., isolated from a solar saltern.Park SJ, Cha IT, Kim SJ, Shin KS, Hong Y, Roh DH, Rhee SKInt J Syst Evol Microbiol10.1099/ijs.0.028647-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysis, *Water MicrobiologyGenetics
Phylogeny33034549Salifodinibacter halophilus gen. nov., sp. nov., a halophilic gammaproteobacterium in the family Salinisphaeraceae isolated from a salt mine in the Colombian Andes.Parada-Pinilla MP, Diaz-Cardenas C, Lopez G, Diaz-Riano JI, Gonzalez LN, Restrepo S, Trujillo ME, Baena SInt J Syst Evol Microbiol10.1099/ijsem.0.0044902020Bacterial Typing Techniques, Base Composition, Colombia, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Genome Size, Geologic Sediments/microbiology, *Mining, *Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Water MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30036Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172639728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes