Name: Sphingobium indicum MTCC 8598
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133465

Type strain:

Species: Sphingobium indicum

Culture col. no.: MTCC 8598, CCM 7432, IP 26

NCBI tax ID(s): 332055 (species)

Other strains from Sphingobium indicum

S. indicum B90A, DSM 16412, CCM 7286, MTCC ... (type strain)
S. indicum UT26, DSM 16413, CCM 7287, MTCC ...
S. indicum Sp+, DSM 26779, CCM 7288, MTCC ...

Section

Sphingobium indicum MTCC 8598 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from HCH dumpsite.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium indicum**
	Full Scientific Name (LPSN)	Sphingobium indicum Pal et al. 2005

	Synonym	Sphingobium chinhatense
	Synonym	Sphingobium japonicum
	Synonym	Sphingobium francense
	Synonym	Sphingobium lucknowense

Information on morphological and physiological properties Morphology

[Ref.: #29075]	Gram stain	negative

[Ref.: #29075]	Cell shape	rod-shaped

[Ref.: #29075]	Motility	no

[Ref.: #29075]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29075]			growth	20-40 °C

	pH	Kind of pH		pH
[Ref.: #29075]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29075]

Oxygen tolerance

aerobe

[Ref.: #29075]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29075]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29075]	arabinose ChEBI	+	carbon source
[Ref.: #29075]	decanoate ChEBI	+	carbon source
[Ref.: #29075]	esculin ChEBI	+	hydrolysis
[Ref.: #29075]	fructose ChEBI	+	carbon source
[Ref.: #29075]	galactose ChEBI	+	carbon source
[Ref.: #29075]	glucose ChEBI	+	carbon source
[Ref.: #29075]	myo-inositol ChEBI	+	carbon source
[Ref.: #29075]	proline ChEBI	+	carbon source
[Ref.: #29075]	ribose ChEBI	+	carbon source
[Ref.: #29075]	salicin ChEBI	+	carbon source
[Ref.: #29075]	serine ChEBI	+	carbon source
[Ref.: #29075]	trehalose ChEBI	+	carbon source
[Ref.: #29075]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29075]		catalase	+	1.11.1.6
[Ref.: #29075]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29075]	Sample type/isolated from	HCH dumpsite
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF190507 (>99% sequence identity) for Sphingobium from Microbeatlas

Aquatic Samples	363
Soil Samples	78
Animal Samples	118
Plant Samples	77
Total Samples	636

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29075]	Sphingobium chinhatense strain IP26 16S ribosomal RNA gene, partial sequence	EF190507	1441	GenBank	1346790 tax ID

Availability in culture collections External links

[Ref.: #29075]

Culture collection no.

MTCC 8598, CCM 7432, IP 26

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobium estronivorans sp. nov. and Sphingobium bisphenolivorans sp. nov., isolated from a wastewater treatment plant.	Qin D, Ma C, Lv M, Yu CP	Int J Syst Evol Microbiol	10.1099/ijsem.0.003978	2020	*
Metabolism	Biotransformation of hexabromocyclododecanes with hexachlorocyclohexane-transforming Sphingobium chinhatense strain IP26.	Heeb NV, Grubelnik A, Geueke B, Kohler HE, Lienemann P	Chemosphere	10.1016/j.chemosphere.2017.05.047	2017	*
Genetics	Draft Genome Sequence of Sphingobium chinhatense Strain IP26T, Isolated from a Hexachlorocyclohexane Dumpsite.	Niharika N, Sangwan N, Ahmad S, Singh P, Khurana JP, Lal R	Genome Announc	10.1128/genomeA.00680-13	2013	*
Phylogeny	Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite.	Dadhwal M, Jit S, Kumari H, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.005553-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29075

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25505 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25505

IJSEM 3140 2009 ( DOI 10.1099/ijs.0.005553-0 , PubMed 19643888 )

* These data were automatically processed and therefore are not curated

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