Name: Pseudidiomarina tainanensis 908087
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133466

Type strain:

Species: Pseudidiomarina tainanensis

Strain Designation: 908087

Culture col. no.: CGMCC 1.7285, JCM 15534

Strain history: X.-W. Xu 908087.

NCBI tax ID(s): 519453 (species)

Special Collections

Other strains from Pseudidiomarina tainanensis

Section

Pseudidiomarina tainanensis 908087 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Pseudidiomarina*
	Species	**Pseudidiomarina tainanensis**
	Full Scientific Name (LPSN)	Pseudidiomarina tainanensis Jean et al. 2009

	Synonym	Pseudidiomarina maritima
	Synonym	Idiomarina maritima
	Synonym	Idiomarina tainanensis

Information on morphological and physiological properties Morphology

[Ref.: #29079]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.744

[Ref.: #29079]	Cell length	1.75 µm

[Ref.: #29079]	Cell width	0.5 µm

[Ref.: #29079]	Cell shape	rod-shaped

[Ref.: #29079]	Motility	yes

[Ref.: #29079]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29079]	growth	10-45 °C
[Ref.: #29079]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29079]			optimum	8.5
[Ref.: #29079]			growth	6.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29079]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.563

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29079]		NaCl		growth	0.5-15	%
[Ref.: #29079]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29079]		tween 20 ChEBI	+	carbon source
[Ref.: #29079]		tween 80 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29079]		catalase	+	1.11.1.6
[Ref.: #29079]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29079]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Coastal seawater sample collected from the East China Sea
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU600203 (>99% sequence identity) for Pseudidiomarina from Microbeatlas

Aquatic Samples	337
Soil Samples	13
Animal Samples	168
Plant Samples	4
Total Samples	522

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29079]	Pseudidiomarina maritima strain 908087 16S ribosomal RNA gene, partial sequence	EU600203	1507	GenBank ENA	519453 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudidiomarina maritima CGMCC 1.7285	GCA_900115255	contig	GenBank ENA	519453 tax ID
[Ref.: #66792]	Idiomarina maritima strain CGMCC 1.7285	519453.3	wgs	PATRIC	519453 tax ID	*
[Ref.: #66792]	Idiomarina maritima CGMCC 1.7285	2617270903	draft	JGI IMG/M	519453 tax ID	*

[Ref.: #29079]	GC-content	45.2 mol%
[Ref.: #67770]	GC-content	45.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	47.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Idiomarina maritima strain CGMCC 1.7285 PATRIC: 519453.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.744	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.606	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.563	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.014	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.475	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	54.491	no

Availability in culture collections External links

[Ref.: #29079]

Culture collection no.

CGMCC 1.7285, JCM 15534

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina indica sp. nov., isolated from seawater.	Song L, Ren F, Huang Y, Dai X, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijs.0.046789-0	2012	*
Phylogeny	Pseudidiomarina donghaiensis sp. nov. and Pseudidiomarina maritima sp. nov., isolated from the East China Sea.	Wu YH, Shen YQ, Xu XW, Wang CS, Oren A, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.005702-0	2009	*
Phylogeny	Pseudidiomarina gelatinasegens sp. nov., isolated from surface sediment of the Terra Nova Bay, Antarctica.	Li A, Zhang M, Xu S, Chen M, Yao Q, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003760	2020	*
Phylogeny	Pseudidiomarina maritima Wu et al. 2009 is a later heterotypic synonym of Pseudidiomarina tainanensis Jean et al. 2009 and emended description of the species.	Liu Y, Lai Q, Shao Z, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003678	2019	*
Phylogeny	Comparative analysis of 16S rRNA signature sequences of the genus Idiomarina and Idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman Sea.	Poddar A, Lepcha RT, Mukherjee D, Bhattacharyya D, Das SK	Res Microbiol	10.1016/j.resmic.2014.07.008	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29079

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25509 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#25509

IJSEM 1321 2009 ( DOI 10.1099/ijs.0.005702-0 , PubMed 19502309 )

* These data were automatically processed and therefore are not curated

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Idiomarina maritima strain CGMCC 1.7285

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