Name: Sphingobium indicum B90A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14184

Type strain:

Species: Sphingobium indicum

Strain Designation: B90A

Culture col. no.: DSM 16412, CCM 7286, MTCC 6364, CIP 108929

Strain history: CIP <- 2005, CCM <- 2005, R. Lal, Dehli Univ., Delhi, India: strain B90A

NCBI tax ID(s): 332055 (species)

SI-ID 265629

CCM 7286, DSM 16412, CIP 108929

Other strains from Sphingobium indicum

S. indicum UT26, DSM 16413, CCM 7287, MTCC ...
S. indicum Sp+, DSM 26779, CCM 7288, MTCC ...

Section

Sphingobium indicum B90A is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from sugarcane rhizosphere soil.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium indicum**
	Full Scientific Name (LPSN)	Sphingobium indicum Pal et al. 2005

	Synonym	Sphingobium chinhatense
	Synonym	Sphingobium japonicum
	Synonym	Sphingobium francense
	Synonym	Sphingobium lucknowense

Information on morphological and physiological properties Morphology

[Ref.: #120083]	Gram stain	negative

[Ref.: #120083]	Cell shape	rod-shaped

[Ref.: #120083]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38370]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38370]

Culture medium growth

[Ref.: #38370]

Culture medium composition

expand / minimize

[Ref.: #120083]

Culture medium

CIP Medium 72

[Ref.: #120083]

Culture medium growth

[Ref.: #120083]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #38370]			growth	30 °C

[Ref.: #38370]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120083]

Oxygen tolerance

facultative anaerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120083]		nitrate ChEBI	+	reduction
[Ref.: #120083]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120083]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120083]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120083]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120083]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120083]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120083]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120083]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120083]	11555	-	+	+	-	-	+	+	-	+	+	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6438]	Sample type/isolated from	sugarcane rhizosphere soil
[Ref.: #6438]	Geographic location (country and/or sea, region)	Cuttack
[Ref.: #6438]	Country	India
[Ref.: #6438]	Country ISO 3 Code	IND
[Ref.: #6438]	Continent	Asia

[Ref.: #120083]	Sample type/isolated from	Environment, Rice rhizosphere
[Ref.: #120083]	Geographic location (country and/or sea, region)	Cuttack
[Ref.: #120083]	Country	India
[Ref.: #120083]	Country ISO 3 Code	IND
[Ref.: #120083]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6438]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120083]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6438]	Sphingobium indicum strain B90A 16S ribosomal RNA gene, partial sequence	AY519129	1452	ENA	861109 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobium indicum B90A	861109.7	plasmid	PATRIC	861109 tax ID	*
[Ref.: #66792]	Sphingobium indicum B90A	861109.5	plasmid	PATRIC	861109 tax ID	*
[Ref.: #66792]	Sphingobium indicum B90A	861109.3	wgs	PATRIC	861109 tax ID	*
[Ref.: #66792]	Sphingobium indicum B90A	861109.6	plasmid	PATRIC	861109 tax ID	*
[Ref.: #66792]	Sphingobium indicum B90A	2775507255	complete	JGI IMG/M	861109 tax ID	*
[Ref.: #66792]	Sphingobium indicum B90A	GCA_000264945	complete	GenBank	861109 tax ID	*

Availability in culture collections External links

[Ref.: #6438]

Culture collection no.

DSM 16412, CCM 7286, MTCC 6364, CIP 108929

[Ref.: #83347]

SI-ID 265629

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov.	Pal R, Bala S, Dadhwal M, Kumar M, Dhingra G, Prakash O, Prabagaran SR, Shivaji S, Cullum J, Holliger C, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.63201-0	2005	*

References

#6438

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16412

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38370 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#83347

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265629.1 )

#120083 Collection of Institut Pasteur ; Curators of the CIP; CIP 108929
* These data were automatically processed and therefore are not curated

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