Algoriphagus aestuariicola (KACC 18987, JCM 31546, S2-A1)

Name: Algoriphagus aestuariicola (KACC 18987, JCM 31546, S2-A1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133393

Type strain

Strain Designation S2-A1

Culture col. no. KACC 18987 JCM 31546 S2-A1

NCBI tax ID(s) 1852016

Special Collections JCM Literature strains

History C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; S2-A1.

Links

Algoriphagus aestuariicola S2-A1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from estuary sediment.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131957

JCM 31546

@ref 20215

Last LPSN update 2026-02-09 11:31:56

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus aestuariicola

Full scientific name Algoriphagus aestuariicola Jia et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
25268	negative	1.4-2.0 µm	0.4-0.7 µm	rod-shaped
125439	negative				99.8
125438	negative				97

Colony morphology

@ref	Colony color	Colony shape	Medium used
25268	reddish orange	circular	marine ager (MA)

Pigmentation

@ref	Production	Name
25268		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
25268	marine ager (MA)
25268	nutritient agar
25268	LB (Luria-Bertani) MEDIUM
25268	tryptic soy agar

Culture temp

@ref	Growth	Type	Temperature (°C)
25268	positive	growth	15-40
25268	positive	optimum	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
25268	positive	optimum	7.0-7.5
25268	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

25268

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25268	NaCl	positive	growth	0.0-4.0 %(w/v)
25268	NaCl		optimum	0.5-1.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25268	17128 ChEBI	adipate	+	assimilation
25268		casein	-	hydrolysis
25268	17634 ChEBI	D-glucose	+	assimilation
25268	16899 ChEBI	D-mannitol	+	assimilation
25268	16024 ChEBI	D-mannose	+	assimilation
25268	27689 ChEBI	decanoate	-	assimilation
25268	16991 ChEBI	dna	-	hydrolysis
25268	4853 ChEBI	esculin	+	hydrolysis
25268	30849 ChEBI	L-arabinose	+	assimilation
25268	25115 ChEBI	malate	-	assimilation
25268	17306 ChEBI	maltose	+	assimilation
25268	506227 ChEBI	N-acetylglucosamine	+	assimilation
25268	17632 ChEBI	nitrate	+	reduction
25268	16301 ChEBI	nitrite	-	reduction
25268	18401 ChEBI	phenylacetate	+	assimilation
25268	32032 ChEBI	potassium gluconate	+	assimilation
25268	53258 ChEBI	sodium citrate	+	assimilation
25268	28017 ChEBI	starch	-	hydrolysis
25268	53424 ChEBI	tween 20	-	hydrolysis
25268	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25268	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25268	acid phosphatase	+	3.1.3.2
25268	alkaline phosphatase	+	3.1.3.1
25268	alpha-chymotrypsin	+	3.4.21.1
25268	alpha-fucosidase	-	3.2.1.51
25268	alpha-galactosidase	+	3.2.1.22
25268	alpha-mannosidase	+	3.2.1.24
25268	beta-galactosidase	+	3.2.1.23
25268	beta-glucosidase	-	3.2.1.21
25268	beta-glucuronidase	+	3.2.1.31
25268	catalase	+	1.11.1.6
25268	cystine arylamidase	+	3.4.11.3
25268	cytochrome oxidase	+	1.9.3.1
25268	esterase (C 4)	+
25268	esterase Lipase (C 8)	+
25268	leucine arylamidase	+	3.4.11.1
25268	lipase (C 14)	-
25268	N-acetyl-beta-glucosaminidase	+	3.2.1.52
25268	naphthol-AS-BI-phosphohydrolase	+
25268	trypsin	-	3.4.21.4
25268	urease	-	3.5.1.5
25268	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

25268

Fatty acid	Percentage
C15:0 iso	42.4
C16:1ω7c / C16:1ω6c	21.4
C17:1 iso ω9c / C16:0 10-methyl	7.6
C15:0 anteiso	4.2
C17:0 iso 3OH	3.5
C16:1ω5c	3.3
C15:0 iso 3OH	2.8
C11:0 anteiso	2.8
C16:0 iso	1.8
anteiso-C17:1 B / iso-C17:1	1.6
C16:1 iso H	1.4
C16:0 iso 3OH	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
25268	estuary sediment	Asan area	Republic of Korea	KOR	Asia	36	126 36/126	marine agar 2216 (MA; BD)	5 days	30	serial dilution
67770	Estuary sediment of the Asan area		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KX268606 (>99% sequence identity) for Algoriphagus aestuariicola from Microbeatlas

Aquatic Samples	32
Soil Samples	123
Animal Samples	61
Plant Samples	11
Total Samples	227

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1725483v1 assembly for Algoriphagus aestuariicola JCM 31546	scaffold	GCA_017254835	1852016.3	8002480576	1852016	56.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25268	Algoriphagus aestuariicola strain S2-A1 16S ribosomal RNA gene, partial sequence	KX268606	1446		1852016

GC content

@ref	GC-content (mol%)	Method
25268	45.6	Thermal denaturation, fluorometry
67770	45.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algoriphagus aestuariicola JCM 31546
NCBI: GCA_017254835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	no	57.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	70.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus aestuariicola JCM 31546
NCBI: GCA_017254835.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	95.11	yes
125438	aerobic	aerobicⓘ	yes	80.80	no
125438	spore-forming	spore-formingⓘ	no	81.98	no
125438	thermophilic	thermophileⓘ	no	95.92	yes
125438	flagellated	motile2+ⓘ	no	89.25	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus aestuariicola sp. nov., isolated from estuary sediment.	Jia X, Jia B, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001711	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25268	X. J. Jia, B.,Kim, K. H.,Jeon, C. O.: Algoriphagus aestuariicola sp. nov., isolated from estuary sediment. IJSEM 67: 914 - 919 2017 ( DOI 10.1099/ijsem.0.001711 , PubMed 27926821 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algoriphagus aestuariicola (KACC 18987, JCM 31546, S2-A1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017254835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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