Strain identifier

BacDive ID: 133393

Type strain: Yes

Species: Algoriphagus aestuariicola

Strain Designation: S2-A1

Strain history: C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; S2-A1.

NCBI tax ID(s): 1852016 (species)

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General

@ref: 25268

BacDive-ID: 133393

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Algoriphagus aestuariicola S2-A1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from estuary sediment.

NCBI tax id

  • NCBI tax id: 1852016
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; S2-A1.

doi: 10.13145/bacdive133393.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus aestuariicola
  • full scientific name: Algoriphagus aestuariicola Jia et al. 2017

@ref: 25268

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus aestuariicola

strain designation: S2-A1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
25268negative1.4-2.0 µm0.4-0.7 µmrod-shapedno
69480no91.948
69480negative99.957

colony morphology

  • @ref: 25268
  • colony color: reddish orange
  • colony shape: circular
  • medium used: marine ager (MA)

pigmentation

  • @ref: 25268
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowth
25268marine ager (MA)yes
25268nutritient agarno
25268LB (Luria-Bertani) MEDIUMno
25268tryptic soy agarno

culture temp

@refgrowthtypetemperaturerange
25268positivegrowth15-40
25268positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
25268positivegrowth6.0-10.0alkaliphile
25268positiveoptimum7.0-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 25268
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.93

halophily

@refsaltgrowthtested relationconcentration
25268NaClpositivegrowth0.0-4.0 %(w/v)
25268NaCloptimum0.5-1.0 %(w/v)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
25268casein-hydrolysis
25268decanoate-assimilation27689
25268dna-hydrolysis16991
25268malate-assimilation25115
25268nitrite-reduction16301
25268starch-hydrolysis28017
25268tween 20-hydrolysis53424
25268tween 80-hydrolysis53426
25268adipate+assimilation17128
25268D-glucose+assimilation17634
25268D-mannitol+assimilation16899
25268D-mannose+assimilation16024
25268esculin+hydrolysis4853
25268L-arabinose+assimilation30849
25268maltose+assimilation17306
25268N-acetylglucosamine+assimilation506227
25268nitrate+reduction17632
25268phenylacetate+assimilation18401
25268potassium gluconate+assimilation32032
25268sodium citrate+assimilation53258

metabolite production

  • @ref: 25268
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25268acid phosphatase+3.1.3.2
25268alkaline phosphatase+3.1.3.1
25268alpha-chymotrypsin+3.4.21.1
25268alpha-fucosidase-3.2.1.51
25268alpha-galactosidase+3.2.1.22
25268alpha-mannosidase+3.2.1.24
25268beta-galactosidase+3.2.1.23
25268beta-glucosidase-3.2.1.21
25268beta-glucuronidase+3.2.1.31
25268catalase+1.11.1.6
25268cystine arylamidase+3.4.11.3
25268cytochrome oxidase+1.9.3.1
25268esterase (C 4)+
25268esterase Lipase (C 8)+
25268leucine arylamidase+3.4.11.1
25268lipase (C 14)-
25268N-acetyl-beta-glucosaminidase+3.2.1.52
25268naphthol-AS-BI-phosphohydrolase+
25268trypsin-3.4.21.4
25268urease-3.5.1.5
25268valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25268C11:0 anteiso2.8
    25268C15:0 anteiso4.2
    25268anteiso-C17:1 B / iso-C17:11.6
    25268C16:1ω5c3.3
    25268C16:1ω7c / C16:1ω6c21.4
    25268C15:0 iso42.4
    25268C15:0 iso 3OH2.8
    25268C16:0 iso1.8
    25268C16:0 iso 3OH1
    25268C16:1 iso H1.4
    25268C17:0 iso 3OH3.5
    25268C17:1 iso ω9c / C16:0 10-methyl7.6
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine broth (MB; BD)
  • agar/liquid: liquid
  • software version: Sherlock 6.0B
  • library/peak naming table: TSBA 6
  • system: MIS MIDI
  • instrument: 6890, Hewlett Packard
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
25268estuary sedimentAsan areaRepublic of KoreaKORAsia36126marine agar 2216 (MA; BD)5 days30serial dilution
67770Estuary sediment of the Asan areaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_178660.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15774;96_25604;97_32112;98_41173;99_178660&stattab=map
  • Last taxonomy: Algoriphagus aestuariicola
  • 16S sequence: KX268606
  • Sequence Identity:
  • Total samples: 227
  • soil counts: 123
  • aquatic counts: 32
  • animal counts: 61
  • plant counts: 11

Sequence information

16S sequences

  • @ref: 25268
  • description: Algoriphagus sp. S2-A1 16S ribosomal RNA gene, partial sequence
  • accession: KX268606
  • length: 1446
  • database: nuccore
  • NCBI tax ID: 1852016

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algoriphagus aestuariicola JCM 31546GCA_017254835scaffoldncbi1852016
66792Algoriphagus aestuariicola strain JCM 315461852016.3wgspatric1852016

GC content

@refGC-contentmethod
2526845.6Thermal denaturation, fluorometry
6777045.6thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.92yes
gram-positiveno97.844yes
anaerobicno98.54yes
aerobicyes85.862yes
halophileno81.802no
spore-formingno95.672no
thermophileno98.627yes
glucose-utilyes91.303yes
motileno91.845no
glucose-fermentno87.417no

External links

@ref: 25268

culture collection no.: KACC 18987, JCM 31546

literature

  • topic: Phylogeny
  • Pubmed-ID: 27926821
  • title: Algoriphagus aestuariicola sp. nov., isolated from estuary sediment.
  • authors: Jia X, Jia B, Kim KH, Jeon CO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001711
  • year: 2017
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25268X. J. Jia, B.,Kim, K. H.,Jeon, C. O.Algoriphagus aestuariicola sp. nov., isolated from estuary sediment10.1099/ijsem.0.001711IJSEM 67: 914-919 201727926821
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1