Haloprofundus marisrubri (JCM 19565, CGMCC 1.14959, SB9)

Name: Haloprofundus marisrubri (JCM 19565, CGMCC 1.14959, SB9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133308

Type strain

Strain Designation SB9

Culture col. no. JCM 19565 CGMCC 1.14959 SB9

NCBI tax ID(s) 1514971

Special Collections JCM Literature strains

Links

Haloprofundus marisrubri SB9 is an aerobe, extremely halophilic, heterotroph prokaryote that has a pink pigmentation and was isolated from the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea.

pigmented aerobe extremely halophilic heterotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 390834

JCM 19565

@ref 20215

Last LPSN update 2025-12-16 10:01:45

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloprofundus

Species Haloprofundus marisrubri

Full scientific name Haloprofundus marisrubri Zhang et al. 2017

Morphology

Colony morphology

@ref	Colony color	Incubation period	Medium used	Colony shape
25151	pink	21 days	Agar plate
25151				circular

Pigmentation

@ref	Production	Color
25151		pink

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
25151	Agar plate		Agar plate containing 3.5–4.3 M NaCl
25151	MR2A (liquid)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25151	positive	growth	15-45
25151	positive	optimum	33-35	mesophilic
67770	positive	growth	35	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25151	positive	optimum	7.0-7.5
25151	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25151	aerobe
125439	aerobe	90.9

Nutrition type

@ref	Type
25151	heterotroph
25151	chemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		94.1

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
25151	extremely halophilic	NaCl	positive	growth	1.2-5.8 M
25151		NaCl		optimum	3.5-4.3 M

Observation

@ref	Observation
25151	lyse in distilled water
67770	quinones: MK-8, MK-8(VIII-H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25151	30089 ChEBI	acetate	-	carbon source
25151		casein	-	hydrolysis
25151	16947 ChEBI	citrate	-	carbon source
25151	15824 ChEBI	D-fructose	+	carbon source
25151	12936 ChEBI	D-galactose	-	builds acid from
25151	17634 ChEBI	D-glucose	+	carbon source
25151	17634 ChEBI	D-glucose	+	builds acid from
25151	16899 ChEBI	D-mannitol	+	carbon source
25151	16899 ChEBI	D-mannitol	+	builds acid from
25151	16024 ChEBI	D-mannose	+	carbon source
25151	16024 ChEBI	D-mannose	+	builds acid from
25151	65327 ChEBI	D-xylose	-	carbon source
25151	65327 ChEBI	D-xylose	-	builds acid from
25151	29806 ChEBI	fumarate	-	carbon source
25151	5291 ChEBI	gelatin	-	hydrolysis
25151	15428 ChEBI	glycine	-	carbon source
25151	30849 ChEBI	L-arabinose	-	builds acid from
25151	16467 ChEBI	L-arginine	-	carbon source
25151	29991 ChEBI	L-aspartate	-	carbon source
25151	29985 ChEBI	L-glutamate	-	carbon source
25151	18019 ChEBI	L-lysine	-	carbon source
25151	15589 ChEBI	L-malate	+	carbon source
25151	15729 ChEBI	L-ornithine	-	carbon source
25151	62345 ChEBI	L-rhamnose	-	carbon source
25151	62345 ChEBI	L-rhamnose	-	builds acid from
25151	17266 ChEBI	L-sorbose	+	carbon source
25151	24996 ChEBI	lactate	-	carbon source
25151	17716 ChEBI	lactose	-	carbon source
25151	18420 ChEBI	magnesium(2+)	+	required for growth
25151	17306 ChEBI	maltose	+	carbon source
25151	17306 ChEBI	maltose	+	builds acid from
25151	17632 ChEBI	nitrate	-	reduction
25151	17632 ChEBI	nitrate	-	builds gas from
25151	15361 ChEBI	pyruvate	+	carbon source
25151	28017 ChEBI	starch	+	hydrolysis
25151	28017 ChEBI	starch	+	carbon source
25151	30031 ChEBI	succinate	+	carbon source
25151	17992 ChEBI	sucrose	+	carbon source
25151	53424 ChEBI	tween 20	-	hydrolysis
25151	53423 ChEBI	tween 40	-	hydrolysis
25151	53425 ChEBI	tween 60	-	hydrolysis
25151	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
25151	338412	(-)-anisomycin
25151	28971	ampicillin
25151	2766	aphidicolin
25151	28669	bacitracin
25151	17698	chloramphenicol
25151	100241	ciprofloxacin
25151	48923	erythromycin
25151	17833	gentamicin
25151	6104	kanamycin
25151	100147	nalidixic acid
25151	7507	neomycin
25151	71415	nitrofurantoin
25151	100246	norfloxacin
25151	28368	novobiocin
25151	7660	nystatin
25151	18208	penicillin g
25151	28077	rifampicin
25151	17076	streptomycin
25151	27902	tetracycline
25151	45924	trimethoprim
25151	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25151	16136 ChEBI	hydrogen sulfide
25151	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25151	catalase	+	1.11.1.6
25151	cytochrome oxidase	+	1.9.3.1
25151	esterase	-
25151	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	enterobactin biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	factor 420 biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	86.36	19 of 22
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	pantothenate biosynthesis	83.33	5 of 6
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	purine metabolism	75.53	71 of 94
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glutamate and glutamine metabolism	75	21 of 28
66794	isoleucine metabolism	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	pyrimidine metabolism	73.33	33 of 45
66794	heme metabolism	71.43	10 of 14
66794	photosynthesis	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	methionine metabolism	69.23	18 of 26
66794	alanine metabolism	68.97	20 of 29
66794	histidine metabolism	68.97	20 of 29
66794	tryptophan metabolism	68.42	26 of 38
66794	lipid metabolism	67.74	21 of 31
66794	arginine metabolism	66.67	16 of 24
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	sulfoquinovose degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	lysine metabolism	64.29	27 of 42
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	metabolism of disaccharids	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	NAD metabolism	61.11	11 of 18
66794	oxidative phosphorylation	60.44	55 of 91
66794	3-chlorocatechol degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	degradation of pentoses	57.14	16 of 28
66794	glutathione metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	pentose phosphate pathway	54.55	6 of 11
66794	vitamin B6 metabolism	54.55	6 of 11
66794	phenylmercury acetate degradation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	arachidonic acid metabolism	50	9 of 18
66794	coenzyme M biosynthesis	50	5 of 10
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	degradation of sugar acids	48	12 of 25
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	urea cycle	46.15	6 of 13
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	vitamin B12 metabolism	44.12	15 of 34
66794	mevalonate metabolism	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	myo-inositol biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	gallate degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	peptidoglycan biosynthesis	40	6 of 15
66794	bacilysin biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carnitine metabolism	37.5	3 of 8
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	cholesterol biosynthesis	36.36	4 of 11
66794	carotenoid biosynthesis	36.36	8 of 22
66794	polyamine pathway	34.78	8 of 23
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	nitrate assimilation	33.33	3 of 9
66794	allantoin degradation	33.33	3 of 9
66794	sulfate reduction	30.77	4 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	ppGpp biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
25151	the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea	2011-10-16 - 2011-11	Saudi Arabian Red Sea	Saudi Arabia	SAU	Asia	21	38 21/38
67770	Brine-seawater interface of Discovery Deep in the Saudi Arabian Red Sea

Taxonmaps

69479

Global distribution of 16S sequence KJ999759 (>99% sequence identity) for Haloprofundus marisrubri subclade from Microbeatlas

Aquatic Samples	18
Soil Samples	7
Animal Samples	1
Plant Samples
Total Samples	26

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM146995v1 assembly for Haloprofundus marisrubri SB9	contig	GCA_001469955	1514971.4	2690315683	1514971	71.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25151	Haloprofundus marisrubri strain SB9 16S ribosomal RNA gene, partial sequence	KJ999759	1404		1514971

GC content

@ref	GC-content (mol%)	Method
25151	62.53
67770	62.53	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haloprofundus marisrubri SB9
NCBI: GCA_001469955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.10	no
125439	motility	BacteriaNetⓘ	yes	70.50	no
125439	gram_stain	BacteriaNetⓘ	negative	79.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Halobacteria and Subcommittee on the taxonomy of Halomonadaceae. Minutes of the joint open meeting, 11 July 2017, Valencia, Spain.	Arahal DR, Oren A, Ventosa A.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002296	2017
Phylogeny	Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface.	Zhang G, Gu J, Zhang R, Rashid M, Haroon MF, Xun W, Ruan Z, Dong X, Stingl U	Int J Syst Evol Microbiol	10.1099/ijsem.0.001559	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25151	G. G. Zhang, J.,Zhang, R.,Rashid, M.,Haroon, M. F.,Xun, W.,Ruan, Z.,Dong, X.,Stingl, U.: Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface. IJSEM 67: 9 - 16 2017 ( DOI 10.1099/ijsem.0.001559 , PubMed 27902200 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloprofundus marisrubri (JCM 19565, CGMCC 1.14959, SB9)

Name and taxonomic classification

Morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001469955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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