Name: Haloprofundus marisrubri SB9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133308

Type strain:

Species: Haloprofundus marisrubri

Strain Designation: SB9

Culture col. no.: JCM 19565, CGMCC 1.14959

Strain history: G. Zhang and U. Stingl SB9.

NCBI tax ID(s): 1514971 (species)

Section

Haloprofundus marisrubri SB9 is an aerobe, extremely halophilic, heterotroph archaeon that has a pink pigmentation and was isolated from the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea.

pigmented
aerobe
extremely halophilic
heterotroph
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Haloprofundus*
	Species	**Haloprofundus marisrubri**
	Full Scientific Name (LPSN)	Haloprofundus marisrubri Zhang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25151]	Colony color	pink
[Ref.: #25151]	Incubation period	21 days
[Ref.: #25151]	Cultivation medium used	Agar plate

[Ref.: #25151]	Colony shape	circular

[Ref.: #25151]	Pigment production	yes
[Ref.: #25151]	Pigmentation color	pink

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25151]

Culture medium

Agar plate

[Ref.: #25151]

Culture medium growth

[Ref.: #25151]

Culture medium composition

expand / minimize

[Ref.: #25151]

Culture medium

MR2A (liquid)

[Ref.: #25151]

Culture medium growth

		Temperature
[Ref.: #25151]	growth	15-45 °C
[Ref.: #25151]	optimum	33-35 °C
[Ref.: #67770]	growth	35 °C

[Ref.: #25151]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25151]			optimum	7.0-7.5
[Ref.: #25151]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25151]

Oxygen tolerance

aerobe

[Ref.: #25151]	Nutrition type	heterotroph
[Ref.: #25151]	Nutrition type	chemoorganotroph

[Ref.: #25151]

Halophily / tolerance level

extremely halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25151]		NaCl		growth	1.2-5.8	M
[Ref.: #25151]		NaCl		optimum	3.5-4.3	M

[Ref.: #25151]	Observation	lyse in distilled water
[Ref.: #67770]	Observation	quinones: MK-8, MK-8(VIII-H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25151]	acetate ChEBI	-	carbon source
[Ref.: #25151]	casein	-	hydrolysis
[Ref.: #25151]	citrate ChEBI	-	carbon source
[Ref.: #25151]	D-fructose ChEBI	+	carbon source
[Ref.: #25151]	D-galactose ChEBI	-	builds acid from
[Ref.: #25151]	D-glucose ChEBI	+	carbon source
[Ref.: #25151]	D-glucose ChEBI	+	builds acid from
[Ref.: #25151]	D-mannitol ChEBI	+	carbon source
[Ref.: #25151]	D-mannitol ChEBI	+	builds acid from
[Ref.: #25151]	D-mannose ChEBI	+	carbon source
[Ref.: #25151]	D-mannose ChEBI	+	builds acid from
[Ref.: #25151]	D-xylose ChEBI	-	carbon source
[Ref.: #25151]	D-xylose ChEBI	-	builds acid from
[Ref.: #25151]	fumarate ChEBI	-	carbon source
[Ref.: #25151]	gelatin ChEBI	-	hydrolysis
[Ref.: #25151]	glycine ChEBI	-	carbon source
[Ref.: #25151]	L-arabinose ChEBI	-	builds acid from
[Ref.: #25151]	L-arginine ChEBI	-	carbon source
[Ref.: #25151]	L-aspartate ChEBI	-	carbon source
[Ref.: #25151]	L-glutamate ChEBI	-	carbon source
[Ref.: #25151]	L-lysine ChEBI	-	carbon source
[Ref.: #25151]	L-malate ChEBI	+	carbon source
[Ref.: #25151]	L-ornithine ChEBI	-	carbon source
[Ref.: #25151]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25151]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #25151]	L-sorbose ChEBI	+	carbon source
[Ref.: #25151]	lactate ChEBI	-	carbon source
[Ref.: #25151]	lactose ChEBI	-	carbon source
[Ref.: #25151]	magnesium(2+) ChEBI	+	required for growth
[Ref.: #25151]	maltose ChEBI	+	carbon source
[Ref.: #25151]	maltose ChEBI	+	builds acid from
[Ref.: #25151]	nitrate ChEBI	-	reduction
[Ref.: #25151]	nitrate ChEBI	-	builds gas from
[Ref.: #25151]	pyruvate ChEBI	+	carbon source
[Ref.: #25151]	starch ChEBI	+	hydrolysis
[Ref.: #25151]	starch ChEBI	+	carbon source
[Ref.: #25151]	succinate ChEBI	+	carbon source
[Ref.: #25151]	sucrose ChEBI	+	carbon source
[Ref.: #25151]	tween 20 ChEBI	-	hydrolysis
[Ref.: #25151]	tween 40 ChEBI	-	hydrolysis
[Ref.: #25151]	tween 60 ChEBI	-	hydrolysis
[Ref.: #25151]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25151]	(-)-anisomycin ChEBI	yes
[Ref.: #25151]	ampicillin ChEBI		yes
[Ref.: #25151]	aphidicolin ChEBI	yes
[Ref.: #25151]	bacitracin ChEBI	yes
[Ref.: #25151]	chloramphenicol ChEBI		yes
[Ref.: #25151]	ciprofloxacin ChEBI		yes
[Ref.: #25151]	erythromycin ChEBI		yes
[Ref.: #25151]	gentamicin ChEBI		yes
[Ref.: #25151]	kanamycin ChEBI		yes
[Ref.: #25151]	nalidixic acid ChEBI		yes
[Ref.: #25151]	neomycin ChEBI		yes
[Ref.: #25151]	nitrofurantoin ChEBI		yes
[Ref.: #25151]	norfloxacin ChEBI		yes
[Ref.: #25151]	novobiocin ChEBI	yes
[Ref.: #25151]	nystatin ChEBI		yes
[Ref.: #25151]	penicillin g ChEBI		yes
[Ref.: #25151]	rifampicin ChEBI		yes
[Ref.: #25151]	streptomycin ChEBI		yes
[Ref.: #25151]	tetracycline ChEBI		yes
[Ref.: #25151]	trimethoprim ChEBI		yes
[Ref.: #25151]	vancomycin ChEBI		yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25151]		hydrogen sulfide ChEBI	no
[Ref.: #25151]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25151]	catalase	+	1.11.1.6
[Ref.: #25151]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25151]	esterase	-
[Ref.: #25151]	urease	-	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	factor 420 biosynthesis	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	palmitate biosynthesis	86.36	19 of 22
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	pantothenate biosynthesis	83.33	5 of 6
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	purine metabolism	75.53	71 of 94
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	non-pathway related	73.68	28 of 38
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	arachidonic acid metabolism	50	9 of 18
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	vitamin B12 metabolism	44.12	15 of 34
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	40	6 of 15
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methanogenesis from CO2	33.33	4 of 12
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	ppGpp biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25151]	Sample type/isolated from	the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea
[Ref.: #25151]	Sampling date	2011-10-16 - 2011-11
[Ref.: #25151]	Geographic location (country and/or sea, region)	Saudi Arabian Red Sea
[Ref.: #25151]	Country	Saudi Arabia
[Ref.: #25151]	Country ISO 3 Code	SAU
[Ref.: #25151]	Continent	Asia
[Ref.: #25151]	Geographic location	21.0000°/38.0000°

[Ref.: #67770]	Sample type/isolated from	Brine-seawater interface of Discovery Deep in the Saudi Arabian Red Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ999759 (>99% sequence identity) for Haloprofundus marisrubri subclade from Microbeatlas

Aquatic Samples	18
Soil Samples	7
Animal Samples	1
Plant Samples
Total Samples	26

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25151]	16S rRNA gene sequence	KJ999759	1404	ENA	1514971 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloprofundus marisrubri SB9	GCA_001469955	contig	GenBank	1514971 tax ID
[Ref.: #66792]	Haloprofundus marisrubri SB9	2690315683	draft	JGI IMG/M	1514971 tax ID	*
[Ref.: #66792]	Haloprofundus marisrubri strain SB9	1514971.4	wgs	PATRIC	1514971 tax ID	*

[Ref.: #25151]	GC-content	62.53 mol%
[Ref.: #67770]	GC-content	62.53 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #25151]

Culture collection no.

JCM 19565, CGMCC 1.14959

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface.	Zhang G, Gu J, Zhang R, Rashid M, Haroon MF, Xun W, Ruan Z, Dong X, Stingl U	Int J Syst Evol Microbiol	10.1099/ijsem.0.001559	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25151

G. G. Zhang, J.,Zhang, R.,Rashid, M.,Haroon, M. F.,Xun, W.,Ruan, Z.,Dong, X.,Stingl, U.: Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface. IJSEM 67: 9 - 16 2017 ( DOI 10.1099/ijsem.0.001559 , PubMed 27902200 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Haloprofundus marisrubri in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF