Strain identifier
BacDive ID: 133308
Type strain:
Species: Haloprofundus marisrubri
Strain Designation: SB9
Strain history: G. Zhang and U. Stingl SB9.
NCBI tax ID(s): 1514971 (species)
General
@ref: 25151
BacDive-ID: 133308
keywords: genome sequence, 16S sequence, Archaea, aerobe, extremely halophilic, heterotroph, pigmented
description: Haloprofundus marisrubri SB9 is an aerobe, extremely halophilic, heterotroph archaeon that has a pink pigmentation and was isolated from the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea.
NCBI tax id
- NCBI tax id: 1514971
- Matching level: species
strain history
- @ref: 67770
- history: G. Zhang and U. Stingl SB9.
doi: 10.13145/bacdive133308.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Haloferacales
- family: Haloferacaceae
- genus: Haloprofundus
- species: Haloprofundus marisrubri
- full scientific name: Haloprofundus marisrubri Zhang et al. 2017
@ref: 25151
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Haloferacales
family: Haloferacaceae
genus: Haloprofundus
species: Haloprofundus marisrubri
strain designation: SB9
type strain: yes
Morphology
colony morphology
@ref | colony color | incubation period | medium used | colony shape |
---|---|---|---|---|
25151 | pink | 21 days | Agar plate | |
25151 | circular |
pigmentation
- @ref: 25151
- production: yes
- color: pink
Culture and growth conditions
culture medium
@ref | name | growth | composition |
---|---|---|---|
25151 | Agar plate | yes | Agar plate containing 3.5–4.3 M NaCl |
25151 | MR2A (liquid) | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
25151 | positive | growth | 15-45 | |
25151 | positive | optimum | 33-35 | mesophilic |
67770 | positive | growth | 35 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
25151 | positive | growth | 5.5-9.5 | alkaliphile |
25151 | positive | optimum | 7.0-7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 25151
- oxygen tolerance: aerobe
nutrition type
@ref | type |
---|---|
25151 | heterotroph |
25151 | chemoorganotroph |
halophily
@ref | halophily level | salt | growth | tested relation | concentration |
---|---|---|---|---|---|
25151 | extremely halophilic | NaCl | positive | growth | 1.2-5.8 M |
25151 | NaCl | optimum | 3.5-4.3 M |
observation
@ref | observation |
---|---|
25151 | lyse in distilled water |
67770 | quinones: MK-8, MK-8(VIII-H2) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
25151 | 30089 | acetate | - | carbon source |
25151 | casein | - | hydrolysis | |
25151 | 16947 | citrate | - | carbon source |
25151 | 12936 | D-galactose | - | builds acid from |
25151 | 65327 | D-xylose | - | carbon source |
25151 | 65327 | D-xylose | - | builds acid from |
25151 | 29806 | fumarate | - | carbon source |
25151 | 5291 | gelatin | - | hydrolysis |
25151 | 15428 | glycine | - | carbon source |
25151 | 30849 | L-arabinose | - | builds acid from |
25151 | 16467 | L-arginine | - | carbon source |
25151 | 29991 | L-aspartate | - | carbon source |
25151 | 29985 | L-glutamate | - | carbon source |
25151 | 18019 | L-lysine | - | carbon source |
25151 | 15729 | L-ornithine | - | carbon source |
25151 | 62345 | L-rhamnose | - | carbon source |
25151 | 62345 | L-rhamnose | - | builds acid from |
25151 | 24996 | lactate | - | carbon source |
25151 | 17716 | lactose | - | carbon source |
25151 | 17632 | nitrate | - | reduction |
25151 | 17632 | nitrate | - | builds gas from |
25151 | 53424 | tween 20 | - | hydrolysis |
25151 | 53423 | tween 40 | - | hydrolysis |
25151 | 53425 | tween 60 | - | hydrolysis |
25151 | 53426 | tween 80 | - | hydrolysis |
25151 | 15824 | D-fructose | + | carbon source |
25151 | 17634 | D-glucose | + | carbon source |
25151 | 17634 | D-glucose | + | builds acid from |
25151 | 16899 | D-mannitol | + | carbon source |
25151 | 16899 | D-mannitol | + | builds acid from |
25151 | 16024 | D-mannose | + | carbon source |
25151 | 16024 | D-mannose | + | builds acid from |
25151 | 15589 | L-malate | + | carbon source |
25151 | 17266 | L-sorbose | + | carbon source |
25151 | 18420 | magnesium(2+) | + | required for growth |
25151 | 17306 | maltose | + | carbon source |
25151 | 17306 | maltose | + | builds acid from |
25151 | 15361 | pyruvate | + | carbon source |
25151 | 28017 | starch | + | hydrolysis |
25151 | 28017 | starch | + | carbon source |
25151 | 30031 | succinate | + | carbon source |
25151 | 17992 | sucrose | + | carbon source |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | is resistant |
---|---|---|---|---|---|
25151 | 2766 | aphidicolin | yes | yes | |
25151 | 338412 | (-)-anisomycin | yes | yes | |
25151 | 28368 | novobiocin | yes | yes | |
25151 | 28669 | bacitracin | yes | yes | |
25151 | 28077 | rifampicin | yes | yes | |
25151 | 48923 | erythromycin | yes | yes | |
25151 | 7660 | nystatin | yes | yes | |
25151 | 71415 | nitrofurantoin | yes | yes | |
25151 | 18208 | penicillin g | yes | yes | |
25151 | 28971 | ampicillin | yes | yes | |
25151 | 17698 | chloramphenicol | yes | yes | |
25151 | 7507 | neomycin | yes | yes | |
25151 | 100246 | norfloxacin | yes | yes | |
25151 | 100241 | ciprofloxacin | yes | yes | |
25151 | 17076 | streptomycin | yes | yes | |
25151 | 6104 | kanamycin | yes | yes | |
25151 | 27902 | tetracycline | yes | yes | |
25151 | 28001 | vancomycin | yes | yes | |
25151 | 17833 | gentamicin | yes | yes | |
25151 | 100147 | nalidixic acid | yes | yes | |
25151 | 45924 | trimethoprim | yes | yes |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
25151 | 16136 | hydrogen sulfide | no |
25151 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
25151 | catalase | + | 1.11.1.6 |
25151 | cytochrome oxidase | + | 1.9.3.1 |
25151 | esterase | - | |
25151 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|---|
25151 | the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea | 2011-10-16 - 2011-11 | Saudi Arabian Red Sea | Saudi Arabia | SAU | Asia | 21 | 38 |
67770 | Brine-seawater interface of Discovery Deep in the Saudi Arabian Red Sea |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_190589.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18095;96_70289;97_91279;98_124153;99_190589&stattab=map
- Last taxonomy: Haloprofundus marisrubri subclade
- 16S sequence: KJ999759
- Sequence Identity:
- Total samples: 26
- soil counts: 7
- aquatic counts: 18
- animal counts: 1
Sequence information
16S sequences
- @ref: 25151
- description: 16S rRNA gene sequence
- accession: KJ999759
- length: 1404
- database: ena
- NCBI tax ID: 1514971
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Haloprofundus marisrubri SB9 | 2690315683 | draft | img | 1514971 |
67770 | Haloprofundus marisrubri SB9 | GCA_001469955 | contig | ncbi | 1514971 |
66792 | Haloprofundus marisrubri strain SB9 | 1514971.4 | wgs | patric | 1514971 |
GC content
@ref | GC-content | method |
---|---|---|
25151 | 62.53 | |
67770 | 62.53 | genome sequence analysis |
External links
@ref: 25151
culture collection no.: JCM 19565, CGMCC 1.14959
literature
- topic: Phylogeny
- Pubmed-ID: 27902200
- title: Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface.
- authors: Zhang G, Gu J, Zhang R, Rashid M, Haroon MF, Xun W, Ruan Z, Dong X, Stingl U
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001559
- year: 2017
- mesh: Base Composition, DNA, Archaeal/genetics, Glycolipids/analysis, Halobacteriaceae/*classification/genetics/isolation & purification, Indian Ocean, Magnesium Chloride/metabolism, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Salts/chemistry, Saudi Arabia, Seawater/*microbiology, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
25151 | G. G. Zhang, J.,Zhang, R.,Rashid, M.,Haroon, M. F.,Xun, W.,Ruan, Z.,Dong, X.,Stingl, U. | Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface | 10.1099/ijsem.0.001559 | IJSEM 67: 9-16 2017 | 27902200 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |