Strain identifier

BacDive ID: 133308

Type strain: Yes

Species: Haloprofundus marisrubri

Strain Designation: SB9

Strain history: G. Zhang and U. Stingl SB9.

NCBI tax ID(s): 1514971 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 25151

BacDive-ID: 133308

keywords: genome sequence, 16S sequence, Archaea, aerobe, extremely halophilic, heterotroph, pigmented

description: Haloprofundus marisrubri SB9 is an aerobe, extremely halophilic, heterotroph archaeon that has a pink pigmentation and was isolated from the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea.

NCBI tax id

  • NCBI tax id: 1514971
  • Matching level: species

strain history

  • @ref: 67770
  • history: G. Zhang and U. Stingl SB9.

doi: 10.13145/bacdive133308.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Haloferacaceae
  • genus: Haloprofundus
  • species: Haloprofundus marisrubri
  • full scientific name: Haloprofundus marisrubri Zhang et al. 2017

@ref: 25151

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Haloferacaceae

genus: Haloprofundus

species: Haloprofundus marisrubri

strain designation: SB9

type strain: yes

Morphology

colony morphology

@refcolony colorincubation periodmedium usedcolony shape
25151pink21 daysAgar plate
25151circular

pigmentation

  • @ref: 25151
  • production: yes
  • color: pink

Culture and growth conditions

culture medium

@refnamegrowthcomposition
25151Agar plateyesAgar plate containing 3.5–4.3 M NaCl
25151MR2A (liquid)yes

culture temp

@refgrowthtypetemperaturerange
25151positivegrowth15-45
25151positiveoptimum33-35mesophilic
67770positivegrowth35mesophilic

culture pH

@refabilitytypepHPH range
25151positivegrowth5.5-9.5alkaliphile
25151positiveoptimum7.0-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 25151
  • oxygen tolerance: aerobe

nutrition type

@reftype
25151heterotroph
25151chemoorganotroph

halophily

@refhalophily levelsaltgrowthtested relationconcentration
25151extremely halophilicNaClpositivegrowth1.2-5.8 M
25151NaCloptimum3.5-4.3 M

observation

@refobservation
25151lyse in distilled water
67770quinones: MK-8, MK-8(VIII-H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2515130089acetate-carbon source
25151casein-hydrolysis
2515116947citrate-carbon source
2515112936D-galactose-builds acid from
2515165327D-xylose-carbon source
2515165327D-xylose-builds acid from
2515129806fumarate-carbon source
251515291gelatin-hydrolysis
2515115428glycine-carbon source
2515130849L-arabinose-builds acid from
2515116467L-arginine-carbon source
2515129991L-aspartate-carbon source
2515129985L-glutamate-carbon source
2515118019L-lysine-carbon source
2515115729L-ornithine-carbon source
2515162345L-rhamnose-carbon source
2515162345L-rhamnose-builds acid from
2515124996lactate-carbon source
2515117716lactose-carbon source
2515117632nitrate-reduction
2515117632nitrate-builds gas from
2515153424tween 20-hydrolysis
2515153423tween 40-hydrolysis
2515153425tween 60-hydrolysis
2515153426tween 80-hydrolysis
2515115824D-fructose+carbon source
2515117634D-glucose+carbon source
2515117634D-glucose+builds acid from
2515116899D-mannitol+carbon source
2515116899D-mannitol+builds acid from
2515116024D-mannose+carbon source
2515116024D-mannose+builds acid from
2515115589L-malate+carbon source
2515117266L-sorbose+carbon source
2515118420magnesium(2+)+required for growth
2515117306maltose+carbon source
2515117306maltose+builds acid from
2515115361pyruvate+carbon source
2515128017starch+hydrolysis
2515128017starch+carbon source
2515130031succinate+carbon source
2515117992sucrose+carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
251512766aphidicolinyesyes
25151338412(-)-anisomycinyesyes
2515128368novobiocinyesyes
2515128669bacitracinyesyes
2515128077rifampicinyesyes
2515148923erythromycinyesyes
251517660nystatinyesyes
2515171415nitrofurantoinyesyes
2515118208penicillin gyesyes
2515128971ampicillinyesyes
2515117698chloramphenicolyesyes
251517507neomycinyesyes
25151100246norfloxacinyesyes
25151100241ciprofloxacinyesyes
2515117076streptomycinyesyes
251516104kanamycinyesyes
2515127902tetracyclineyesyes
2515128001vancomycinyesyes
2515117833gentamicinyesyes
25151100147nalidixic acidyesyes
2515145924trimethoprimyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2515116136hydrogen sulfideno
2515135581indoleno

enzymes

@refvalueactivityec
25151catalase+1.11.1.6
25151cytochrome oxidase+1.9.3.1
25151esterase-
25151urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitude
25151the Discovery Deep brine-seawater interface in the Saudi Arabian Red Sea2011-10-16 - 2011-11Saudi Arabian Red SeaSaudi ArabiaSAUAsia2138
67770Brine-seawater interface of Discovery Deep in the Saudi Arabian Red Sea

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_190589.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18095;96_70289;97_91279;98_124153;99_190589&stattab=map
  • Last taxonomy: Haloprofundus marisrubri subclade
  • 16S sequence: KJ999759
  • Sequence Identity:
  • Total samples: 26
  • soil counts: 7
  • aquatic counts: 18
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 25151
  • description: 16S rRNA gene sequence
  • accession: KJ999759
  • length: 1404
  • database: ena
  • NCBI tax ID: 1514971

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloprofundus marisrubri SB92690315683draftimg1514971
67770Haloprofundus marisrubri SB9GCA_001469955contigncbi1514971
66792Haloprofundus marisrubri strain SB91514971.4wgspatric1514971

GC content

@refGC-contentmethod
2515162.53
6777062.53genome sequence analysis

External links

@ref: 25151

culture collection no.: JCM 19565, CGMCC 1.14959

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902200
  • title: Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface.
  • authors: Zhang G, Gu J, Zhang R, Rashid M, Haroon MF, Xun W, Ruan Z, Dong X, Stingl U
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001559
  • year: 2017
  • mesh: Base Composition, DNA, Archaeal/genetics, Glycolipids/analysis, Halobacteriaceae/*classification/genetics/isolation & purification, Indian Ocean, Magnesium Chloride/metabolism, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Salts/chemistry, Saudi Arabia, Seawater/*microbiology, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25151G. G. Zhang, J.,Zhang, R.,Rashid, M.,Haroon, M. F.,Xun, W.,Ruan, Z.,Dong, X.,Stingl, U.Haloprofundus marisrubri gen. nov., sp. nov., an extremely halophilic archaeon isolated from a brine-seawater interface10.1099/ijsem.0.001559IJSEM 67: 9-16 201727902200
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/