Name: Tropicimonas arenosa KCTC 52178
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133301

Type strain:

Species: Tropicimonas arenosa

Culture col. no.: KCTC 52178, NBRC 111995, CAU 1062

NCBI tax ID(s): 1854710 (species)

Section

Tropicimonas arenosa KCTC 52178 is an aerobe bacterium that forms circular colonies and was isolated from marine sand in Jeju island.

colony-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Tropicimonas*
	Species	**Tropicimonas arenosa**
	Full Scientific Name (LPSN)	Tropicimonas arenosa Oh et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25058]	Colony color	pale pink
[Ref.: #25058]	Colony shape	circular
[Ref.: #25058]	Incubation period	3 days
[Ref.: #25058]	Cultivation medium used	MA (marine agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25058]

Culture medium

Marine agar (MA)

[Ref.: #25058]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25058]			growth	10-37 °C
[Ref.: #25058]			optimum	30 °C

[Ref.: #25058]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25058]			optimum	8
[Ref.: #25058]			growth	6.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25058]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25058]		NaCl		optimum	2	%
[Ref.: #25058]		NaCl		growth	0-8	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25058]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	assimilation
[Ref.: #25058]	5-dehydro-D-gluconate ChEBI	+	growth
[Ref.: #25058]	casein	-	hydrolysis
[Ref.: #25058]	D-arabinose ChEBI	-	carbon source
[Ref.: #25058]	D-fructose ChEBI	-	carbon source
[Ref.: #25058]	D-glucose ChEBI	-	carbon source
[Ref.: #25058]	D-mannitol ChEBI	-	carbon source
[Ref.: #25058]	D-mannitol ChEBI	+	assimilation
[Ref.: #25058]	D-mannose ChEBI	-	carbon source
[Ref.: #25058]	D-ribose ChEBI	+	growth
[Ref.: #25058]	D-tagatose ChEBI	+	growth
[Ref.: #25058]	D-tagatose ChEBI	+	carbon source
[Ref.: #25058]	D-xylose ChEBI	-	carbon source
[Ref.: #25058]	D-xylose ChEBI	+	growth
[Ref.: #25058]	esculin ChEBI	+	hydrolysis
[Ref.: #25058]	gelatin ChEBI	-	hydrolysis
[Ref.: #25058]	glycerol ChEBI	-	carbon source
[Ref.: #25058]	maltose ChEBI	-	carbon source
[Ref.: #25058]	starch ChEBI	-	hydrolysis
[Ref.: #25058]	turanose ChEBI	-	carbon source
[Ref.: #25058]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25058]	acid phosphatase	+	3.1.3.2
[Ref.: #25058]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25058]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25058]	beta-galactosidase	-	3.2.1.23
[Ref.: #25058]	beta-glucosidase	-	3.2.1.21
[Ref.: #25058]	catalase	+	1.11.1.6
[Ref.: #25058]	cystine arylamidase	-	3.4.11.3
[Ref.: #25058]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25058]	esterase (C 4)	+
[Ref.: #25058]	esterase Lipase (C 8)	+
[Ref.: #25058]	leucine arylamidase	+	3.4.11.1
[Ref.: #25058]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25058]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25058]

Fatty acid	Percentage	ECL
C18:1ω7c	79.93
C18:0	9.63
C16:0	3.74
11-Methyl C18:1ω7c	1.71
C12:0 3OH	1.69
Unknown (ECL) 18.846 / C19:1ω6c	1.49	19
C17:0	0.27

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25058]	Sample type/isolated from	marine sand in Jeju island
[Ref.: #25058]	Geographic location (country and/or sea, region)	Jeju island in Republic of Korea
[Ref.: #25058]	Country	Republic of Korea
[Ref.: #25058]	Country ISO 3 Code	KOR
[Ref.: #25058]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25058]	16S rRNA gene sequence	KU719510	1440	ENA	1854710 tax ID

[Ref.: #25058]

GC-content

65.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25058]

Culture collection no.

KCTC 52178, NBRC 111995, CAU 1062

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tropicimonasarenosa sp. nov., isolated from marine sand.	Oh M, Kim JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001549	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25058

M. K. Oh, J. H.,Kim, W.: Tropicimonas arenosa sp. nov., isolated from marine sand. IJSEM 66: 5514 - 5518 2016 ( DOI 10.1099/ijsem.0.001549 , PubMed 27902182 )

* These data were automatically processed and therefore are not curated

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