Strain identifier

BacDive ID: 133301

Type strain: Yes

Species: Tropicimonas arenosa

NCBI tax ID(s): 1854710 (species)

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General

@ref: 25058

BacDive-ID: 133301

keywords: 16S sequence, Bacteria, aerobe, colony-forming

description: Tropicimonas arenosa KCTC 52178 is an aerobe bacterium that forms circular colonies and was isolated from marine sand in Jeju island.

NCBI tax id

  • NCBI tax id: 1854710
  • Matching level: species

doi: 10.13145/bacdive133301.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Tropicimonas
  • species: Tropicimonas arenosa
  • full scientific name: Tropicimonas arenosa Oh et al. 2016

@ref: 25058

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Tropicimonas

species: Tropicimonas arenosa

type strain: yes

Morphology

colony morphology

  • @ref: 25058
  • colony color: pale pink
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA (marine agar)

Culture and growth conditions

culture medium

  • @ref: 25058
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25058positivegrowth10-37
25058positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
25058positivegrowth6.5-10.5alkaliphile
25058positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 25058
  • oxygen tolerance: aerobe

halophily

@refsalttested relationconcentrationgrowth
25058NaCloptimum2 %
25058NaClgrowth0-8 %(w/v)positive

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
25058casein-hydrolysis
25058D-arabinose-carbon source17108
25058D-fructose-carbon source15824
25058D-glucose-carbon source17634
25058maltose-carbon source17306
25058D-mannitol-carbon source16899
25058D-mannose-carbon source16024
25058turanose-carbon source32528
25058D-xylose-carbon source65327
25058gelatin-hydrolysis5291
25058glycerol-carbon source17754
25058starch-hydrolysis28017
25058urea-hydrolysis16199
250584-nitrophenyl beta-D-galactopyranoside hydrolysate+assimilation
250585-dehydro-D-gluconate+growth58143
25058D-mannitol+assimilation16899
25058D-ribose+growth16988
25058D-tagatose+growth16443
25058D-tagatose+carbon source16443
25058D-xylose+growth65327
25058esculin+hydrolysis4853

enzymes

@refvalueactivityec
25058acid phosphatase+3.1.3.2
25058alkaline phosphatase+3.1.3.1
25058alpha-glucosidase-3.2.1.20
25058beta-galactosidase-3.2.1.23
25058beta-glucosidase-3.2.1.21
25058catalase+1.11.1.6
25058cystine arylamidase-3.4.11.3
25058cytochrome oxidase+1.9.3.1
25058esterase (C 4)+
25058esterase Lipase (C 8)+
25058leucine arylamidase+3.4.11.1
25058naphthol-AS-BI-phosphohydrolase+
25058valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    2505811-Methyl C18:1ω7c1.71
    25058C12:0 3OH1.69
    25058C16:03.74
    25058C17:00.27
    25058C18:09.63
    25058C18:1ω7c79.93
    25058Unknown (ECL) 18.846 / C19:1ω6c1.4919
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine Agar (MA)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 3
  • software version: Sherlock 6.1
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 25058
  • sample type: marine sand in Jeju island
  • geographic location: Jeju island in Republic of Korea
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Sandy

Sequence information

16S sequences

  • @ref: 25058
  • description: 16S rRNA gene sequence
  • accession: KU719510
  • length: 1440
  • database: ena
  • NCBI tax ID: 1854710

GC content

  • @ref: 25058
  • GC-content: 65.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25058

culture collection no.: KCTC 52178, NBRC 111995, CAU 1062

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902182
  • title: Tropicimonasarenosa sp. nov., isolated from marine sand.
  • authors: Oh M, Kim JH, Kim W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001549
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Silicon Dioxide, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25058M. K. Oh, J. H.,Kim, W.Tropicimonas arenosa sp. nov., isolated from marine sand10.1099/ijsem.0.001549IJSEM 66: 5514-5518 201627902182