Arsenicitalea aurantiaca (42-50, CCTCC AB 2014325, KCTC 42825)

Name: Arsenicitalea aurantiaca (42-50, CCTCC AB 2014325, KCTC 42825)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133299

Type strain

Strain Designation 42-50

Culture col. no. 42-50 CCTCC AB 2014325 KCTC 42825

NCBI tax ID(s) 1783274

Special Collections KCTC Literature strains

Links

Arsenicitalea aurantiaca 42-50 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from high-arsenic sediment.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28219

KCTC 42825

@ref 20215

Last LPSN update 2026-02-09 11:31:55

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Devosiaceae

Genus Arsenicitalea

Species Arsenicitalea aurantiaca

Full scientific name Arsenicitalea aurantiaca Mu et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
25061	negative	rod-shaped
125439	negative			94.3

Colony morphology

@ref	Colony color	Colony shape	Medium used
25061	orange	circular	0.1xTSB

Culture and growth conditions

Culture medium

@ref	Name	Growth
25061	0.1xTSB

Culture temp

@ref	Growth	Type	Temperature (°C)
25061	positive	growth	15.0-42.0
25061	positive	optimum	37

Culture pH

@ref	Ability	Type	PH	PH range
25061	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

25061

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
25061
125439		90.6

Halophily

@ref	Salt	Tested relation	Concentration
25061	NaCl	resistant	1.0-5.0 %(w/v)

Tolerance

@ref	Compound	Concentration
25061	Arsenate	40.0 mM
25061	Arsenite	20.0 mM

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25061	16808 ChEBI	2-dehydro-D-gluconate	-	assimilation
25061	37054 ChEBI	3-hydroxybutyrate	-	assimilation
25061	17879 ChEBI	4-hydroxybenzoate	-	assimilation
25061	58143 ChEBI	5-dehydro-D-gluconate	-	assimilation
25061	17128 ChEBI	adipate	-	assimilation
25061		casein	-	hydrolysis
25061	17634 ChEBI	D-glucose	+	assimilation
25061	16899 ChEBI	D-mannitol	+	assimilation
25061	16024 ChEBI	D-mannose	+	assimilation
25061	16988 ChEBI	D-ribose	+	assimilation
25061	17924 ChEBI	D-sorbitol	+	assimilation
25061	27689 ChEBI	decanoate	-	assimilation
25061	28087 ChEBI	glycogen	-	assimilation
25061	16977 ChEBI	L-alanine	-	assimilation
25061	30849 ChEBI	L-arabinose	-	assimilation
25061	18287 ChEBI	L-fucose	+	assimilation
25061	15971 ChEBI	L-histidine	-	assimilation
25061	17203 ChEBI	L-proline	-	assimilation
25061	62345 ChEBI	L-rhamnose	-	assimilation
25061	17115 ChEBI	L-serine	-	assimilation
25061	24996 ChEBI	lactate	-	assimilation
25061	25115 ChEBI	malate	+	assimilation
25061	17306 ChEBI	maltose	-	assimilation
25061	28053 ChEBI	melibiose	+	assimilation
25061	17268 ChEBI	myo-inositol	-	assimilation
25061	506227 ChEBI	N-acetylglucosamine	+	assimilation
25061	17632 ChEBI	nitrate	+	reduction
25061	32032 ChEBI	potassium gluconate	-	assimilation
25061	17015 ChEBI	riboflavin	-	hydrolysis
25061	17814 ChEBI	salicin	+	assimilation
25061	32954 ChEBI	sodium acetate	-	assimilation
25061	53258 ChEBI	sodium citrate	+	assimilation
25061	62983 ChEBI	sodium malonate	-	assimilation
25061	28017 ChEBI	starch	-	hydrolysis
25061	27897 ChEBI	tryptophan	-	energy source
25061	18186 ChEBI	tyrosine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25061	16136 ChEBI	hydrogen sulfide
25061	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25061	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25061	alkaline phosphatase	-	3.1.3.1
25061	alpha-chymotrypsin	-	3.4.21.1
25061	alpha-fucosidase	-	3.2.1.51
25061	alpha-galactosidase	-	3.2.1.22
25061	alpha-glucosidase	-	3.2.1.20
25061	alpha-mannosidase	-	3.2.1.24
25061	arginine dihydrolase	-	3.5.3.6
25061	beta-glucosidase	+	3.2.1.21
25061	catalase	+	1.11.1.6
25061	cystine arylamidase	-	3.4.11.3
25061	cytochrome oxidase	+	1.9.3.1
25061	esterase (C 4)	+
25061	esterase Lipase (C 8)	+
25061	gelatinase	+
25061	leucine arylamidase	+	3.4.11.1
25061	lipase (C 14)	-
25061	lysine decarboxylase	-	4.1.1.18
25061	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25061	naphthol-AS-BI-phosphohydrolase	+
25061	ornithine decarboxylase	-	4.1.1.17
25061	trypsin	+	3.4.21.4
25061	tryptophan deaminase	-	4.1.99.1
25061	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	resorcinol degradation	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	glycine betaine biosynthesis	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	Entner Doudoroff pathway	100	10 of 10
66794	suberin monomers biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	degradation of sugar acids	92	23 of 25
66794	pyrimidine metabolism	91.11	41 of 45
66794	pentose phosphate pathway	90.91	10 of 11
66794	lipid A biosynthesis	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	purine metabolism	86.17	81 of 94
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	degradation of sugar alcohols	81.25	13 of 16
66794	threonine metabolism	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	degradation of hexoses	77.78	14 of 18
66794	leucine metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	degradation of pentoses	75	21 of 28
66794	isoleucine metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	propanol degradation	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	myo-inositol biosynthesis	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	arginine metabolism	66.67	16 of 24
66794	d-mannose degradation	66.67	6 of 9
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	oxidative phosphorylation	64.84	59 of 91
66794	glycolysis	64.71	11 of 17
66794	metabolism of disaccharids	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	vitamin K metabolism	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	3-chlorocatechol degradation	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	lysine metabolism	54.76	23 of 42
66794	vitamin B1 metabolism	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	selenocysteine biosynthesis	50	3 of 6
66794	biotin biosynthesis	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	sphingosine metabolism	50	3 of 6
66794	lactate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	polyamine pathway	47.83	11 of 23
66794	sulfate reduction	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	d-xylose degradation	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	arachidonic acid metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	ascorbate metabolism	40.91	9 of 22
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	creatinine degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	3-phenylpropionate degradation	40	6 of 15
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
25061	high-arsenic sediment	Jianghan Plain, Hubei Province	China	CHN	Asia	30	113 30/113	0.1xTSB agar	with 5.0 mM As(V) (Na3AsO4.12H2O)	7 days	30

Taxonmaps

69479

Global distribution of 16S sequence KT595938 (>99% sequence identity) for Arsenicitalea aurantiaca subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	7
Animal Samples	6
Plant Samples
Total Samples	14

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM399448v1 assembly for Arsenicitalea aurantiaca 42-50	contig	GCA_003994485	1783274.4	2837662100	1783274	73.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25061	Arsenicitalea aurantiaca strain 42-50 16S ribosomal RNA gene, partial sequence	KT595938	1438		1783274

GC content

@ref	GC-content (mol%)	Method
25061	73.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arsenicitalea aurantiaca 42-50
NCBI: GCA_003994485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.60	no
125439	motility	BacteriaNetⓘ	yes	53.80	no
125439	gram_stain	BacteriaNetⓘ	negative	94.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment.	Mu Y, Zhou L, Zeng XC, Liu L, Pan Y, Chen X, Wang J, Li S, Li WJ, Wang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001543	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25061	Y. Z. Mu, L.,Zeng, X. C.,Liu, L.,Pan, Y.,Chen, X.,Wang, J.,Li, S.,Li, W. J.,Wang, Y.: Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment. IJSEM 66: 5478 - 5484 2016 ( DOI 10.1099/ijsem.0.001543 , PubMed 27902179 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arsenicitalea aurantiaca (42-50, CCTCC AB 2014325, KCTC 42825)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003994485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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