Bordetella pseudohinzii (DSM 106160, NCTC 13808, NRRL B-59942)

Name: Bordetella pseudohinzii (DSM 106160, NCTC 13808, NRRL B-59942)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133298

Type strain

Strain Designation 8-296-03

Culture col. no. DSM 106160 NCTC 13808 NRRL B-59942 8-296-03 CIP 111487

NCBI tax ID(s) 1331258

Special Collections DSMZ Literature strains CIP

Links

Bordetella pseudohinzii 8-296-03 is a mesophilic, Gram-negative, motile prokaryote that was isolated from oropharyngeal swab of a C57BL/6 laboratory mouse.

Gram-negative motile rod-shaped mesophilic genome sequence

Name and taxonomic classification

SI-ID 398862

NCTC 13808,DSM 106160

@ref 20215

Last LPSN update 2025-12-16 10:01:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Bordetella

Species Bordetella pseudohinzii

Full scientific name Bordetella pseudohinzii Ivanov et al. 2016

BacDive ID	Other strains from **Bordetella pseudohinzii** (1)	Type strain
140250	B. pseudohinzii

Morphology

Cell morphology

@ref	Gram stain	Cell shape
25062	negative	rod-shaped
125439	negative
125438	negative
121990	negative	rod-shaped

Colony morphology

@ref	Type of hemolysis	Colony size	Colony color	Incubation period	Medium used
25062	gamma	1.0-1.5 mm	non-pigmented,translucent	2 days	Bordet-Gengou agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
25062	Bordet-Gengou agar
42857	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
42857	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
121990	CIP Medium 6

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42857	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97
125438		90.437

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25062	NaCl	positive	growth	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25062	17521 ChEBI	(-)-quinic acid	-	assimilation
25062	16997 ChEBI	1,2-propandiol	-	assimilation
25062	62064 ChEBI	2,3-butanediol	-	assimilation
25062	30916 ChEBI	2-oxoglutarate	+	assimilation
25062	28644 ChEBI	2-oxopentanoate	-	assimilation
25062	73918 ChEBI	3-O-methyl-D-glucose	-	assimilation
25062	18240 ChEBI	4-hydroxy-L-proline	-	assimilation
25062	17879 ChEBI	4-hydroxybenzoate	-	assimilation
25062	16724 ChEBI	4-hydroxybutyrate	-	assimilation
25062	15887 ChEBI	5-aminovaleric acid	-	assimilation
25062	27856 ChEBI	acetamide	-	assimilation
25062	30089 ChEBI	acetate	+	assimilation
25062	15688 ChEBI	acetoin	-	assimilation
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
25062	37690 ChEBI	allose	-	assimilation
25062	27613 ChEBI	amygdalin	-	assimilation
25062	22605 ChEBI	arabinitol	-	assimilation
25062	18305 ChEBI	arbutin	-	assimilation
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
25062	28860 ChEBI	beta-D-glucuronic acid	-	assimilation
25062	73706 ChEBI	bromosuccinate	-	assimilation
25062	17968 ChEBI	butyrate	+	assimilation
25062	17126 ChEBI	carnitine	-	assimilation
25062	17057 ChEBI	cellobiose	-	assimilation
25062	37397 ChEBI	chondroitin sulfate	-	assimilation
25062	30719 ChEBI	citraconate	-	assimilation
25062	13997 ChEBI	citramalate	-	assimilation
25062	16947 ChEBI	citrate	+	assimilation
25062	23456 ChEBI	cyclodextrin	-	assimilation
25062	15570 ChEBI	D-alanine	+	assimilation
25062	17108 ChEBI	D-arabinose	+	assimilation
25062	29990 ChEBI	D-aspartate	+	assimilation
25062	78697 ChEBI	D-fructose 6-phosphate	-	assimilation
25062	15895 ChEBI	D-galactonic acid lactone	-	assimilation
25062	18024 ChEBI	D-galacturonic acid	-	assimilation
25062	30612 ChEBI	D-glucarate	+	assimilation
25062	8391 ChEBI	D-gluconate	-	assimilation
25062	17315 ChEBI	D-glucosamine	+	assimilation
25062	17784 ChEBI	D-glucosaminic acid	-	assimilation
25062	17634 ChEBI	D-glucose	-	assimilation
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
25062	14314 ChEBI	D-glucose 6-phosphate	-	assimilation
25062	15748 ChEBI	D-glucuronate	-	assimilation
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
25062	74168 ChEBI	D-ribono-1,4-lactone	+	assimilation
25062	16988 ChEBI	D-ribose	+	assimilation
25062	16523 ChEBI	D-serine	-	assimilation
25062	16398 ChEBI	D-threonine	-	assimilation
25062	65327 ChEBI	D-xylose	+	assimilation
25062	27689 ChEBI	decanoate	-	assimilation
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
25062	23652 ChEBI	dextrin	-	assimilation
25062	17113 ChEBI	erythritol	-	assimilation
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
25062	16000 ChEBI	ethanolamine	-	assimilation
25062	28757 ChEBI	fructose	-	assimilation
25062	33984 ChEBI	fucose	-	assimilation
25062	29806 ChEBI	fumarate	+	assimilation
25062	16537 ChEBI	galactarate	-	assimilation
25062	16813 ChEBI	galactitol	-	assimilation
25062	28260 ChEBI	galactose	-	assimilation
25062	16865 ChEBI	gamma-aminobutyric acid	-	assimilation
25062	5291 ChEBI	gelatin	-	assimilation
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
25062	28066 ChEBI	gentiobiose	-	assimilation
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
25062	17234 ChEBI	glucose	-	assimilation
25062	29042 ChEBI	glucose 1-phosphate	-	assimilation
25062	32323 ChEBI	glucuronamide	-	assimilation
25062	17754 ChEBI	glycerol	-	assimilation
25062	15978 ChEBI	glycerol 3-phosphate	+	assimilation
25062	15428 ChEBI	glycine	-	assimilation
25062	70744 ChEBI	glycine-proline	+	assimilation
25062	29805 ChEBI	glycolate	-	assimilation
25062	73804 ChEBI	glycyl L-aspartic acid	+	assimilation
25062	73784 ChEBI	glycyl-l-glutamate	+	assimilation
25062	36655 ChEBI	glyoxylate	-	assimilation
25062	17120 ChEBI	hexanoate	-	assimilation
25062	15443 ChEBI	inulin	-	assimilation
25062	21217 ChEBI	L-alaninamide	+	assimilation
25062	16977 ChEBI	L-alanine	+	assimilation
25062	73786 ChEBI	L-alanylglycine	+	assimilation
25062	30849 ChEBI	L-arabinose	+	assimilation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
25062	16467 ChEBI	L-arginine	-	assimilation
25062	17196 ChEBI	L-asparagine	+	assimilation
25062	17464 ChEBI	L-galactonic acid gamma-lactone	-	assimilation
25062	29985 ChEBI	L-glutamate	+	assimilation
25062	18050 ChEBI	L-glutamine	+	assimilation
25062	15971 ChEBI	L-histidine	-	assimilation
25062	15699 ChEBI	L-homoserine	-	assimilation
25062	17191 ChEBI	L-isoleucine	-	assimilation
25062	15603 ChEBI	L-leucine	+	assimilation
25062	18019 ChEBI	L-lysine	-	assimilation
25062	62320 ChEBI	L-lyxose	+	assimilation
25062	16643 ChEBI	L-methionine	-	assimilation
25062	15729 ChEBI	L-ornithine	+	assimilation
25062	17295 ChEBI	L-phenylalanine	+	assimilation
25062	17203 ChEBI	L-proline	+	assimilation
25062	17115 ChEBI	L-serine	+	assimilation
25062	16857 ChEBI	L-threonine	+	assimilation
25062	16414 ChEBI	L-valine	-	assimilation
25062	75323 ChEBI	lactitol	-	assimilation
25062	17716 ChEBI	lactose	-	assimilation
25062	6359 ChEBI	lactulose	-	assimilation
25062	6364 ChEBI	laminarin	-	assimilation
25062	25115 ChEBI	malate	+	assimilation
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
25062	15792 ChEBI	malonate	-	assimilation
25062	68428 ChEBI	maltitol	-	assimilation
25062	17306 ChEBI	maltose	-	assimilation
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
25062	61993 ChEBI	maltotriose	-	assimilation
25062	28808 ChEBI	mannan	-	assimilation
25062	29864 ChEBI	mannitol	-	assimilation
25062	37684 ChEBI	mannose	-	assimilation
25062	6731 ChEBI	melezitose	-	assimilation
25062	75299 ChEBI	melibionic acid	-	assimilation
25062	28053 ChEBI	melibiose	-	assimilation
25062	74611 ChEBI	methyl (R)-lactate	-	assimilation
25062	55507 ChEBI	methyl alpha-D-galactoside	-	assimilation
25062	43943 ChEBI	methyl alpha-D-mannoside	-	assimilation
25062	17540 ChEBI	methyl beta-D-galactoside	-	assimilation
25062	74863 ChEBI	methyl beta-D-xylopyranoside	-	assimilation
25062	37657 ChEBI	methyl D-glucoside	-	assimilation
25062	75146 ChEBI	monomethyl succinate	+	assimilation
25062	17268 ChEBI	myo-inositol	-	assimilation
25062	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	assimilation
25062	28037 ChEBI	N-acetylgalactosamine	-	assimilation
25062	506227 ChEBI	N-acetylglucosamine	-	assimilation
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
25062	35418 ChEBI	n-acetylneuraminate	-	assimilation
25062	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
25062	16301 ChEBI	nitrite	-	reduction
25062	17134 ChEBI	octopamine	-	assimilation
25062	30623 ChEBI	oxalate	-	assimilation
25062	16452 ChEBI	oxaloacetate	+	assimilation
25062	18394 ChEBI	palatinose	-	assimilation
25062	17309 ChEBI	pectin	-	assimilation
25062	50048 ChEBI	phenylethylamine	-	assimilation
25062	17272 ChEBI	propionate	-	assimilation
25062	33951 ChEBI	psicose	-	assimilation
25062	17148 ChEBI	putrescine	-	assimilation
25062	15361 ChEBI	pyruvate	+	assimilation
25062	16634 ChEBI	raffinose	-	assimilation
25062	26546 ChEBI	rhamnose	-	assimilation
25062	15963 ChEBI	ribitol	-	assimilation
25062	17814 ChEBI	salicin	-	assimilation
25062	30762 ChEBI	salicylate	-	assimilation
25062	41865 ChEBI	sebacic acid	-	assimilation
25062	74526 ChEBI	sec-butylamine	-	assimilation
25062	32488 ChEBI	sedoheptulosan	-	assimilation
25062	30911 ChEBI	sorbitol	-	assimilation
25062	27922 ChEBI	sorbose	-	assimilation
25062	17164 ChEBI	stachyose	-	assimilation
25062	30031 ChEBI	succinate	+	assimilation
25062	17992 ChEBI	sucrose	-	assimilation
25062	33954 ChEBI	tagatose	-	assimilation
25062	132950 ChEBI	tartrate	+	carbon source
25062	27082 ChEBI	trehalose	-	assimilation
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
25062	32528 ChEBI	turanose	-	assimilation
25062	15760 ChEBI	tyramine	-	assimilation
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
25062	17151 ChEBI	xylitol	-	assimilation
25062	18222 ChEBI	xylose	-	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
25062	catalase	+	1.11.1.6
25062	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
25062	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
42857	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Laboratory
#Infection	#Patient
#Host	#Mammals
#Host Body-Site	#Oral cavity and airways

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
25062	oropharyngeal swab of a C57BL/6 laboratory mouse	USA	USA	North America
42857	oropharyngeal swab of C57BL/6 laboratory mouse	USA	USA	North America
121990	Human, Oropharyngeal swab	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121990	2	Risk group (French classification)
42857	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	gbh03v02 assembly for Bordetella pseudohinzii 8-296-03	contig	GCA_000657795	1331258.3	1331258	43.89

Genome browser: GCA_000657795

GC content

@ref	GC-content (mol%)
25062	66.6
42857	66.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bordetella pseudohinzii 8-296-03
NCBI: GCA_000657795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	79.90	no
125439	gram_stain	BacteriaNetⓘ	negative	94.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	61.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bordetella pseudohinzii 8-296-03
NCBI: GCA_000657795.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.30	no
125438	anaerobic	anaerobicⓘ	no	98.39	no
125438	aerobic	aerobicⓘ	yes	86.98	no
125438	spore-forming	spore-formingⓘ	no	90.44	no
125438	thermophilic	thermophileⓘ	no	96.29	no
125438	flagellated	motile2+ⓘ	yes	82.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Identification and taxonomic characterization of Bordetella pseudohinzii sp. nov. isolated from laboratory-raised mice.	Ivanov YV, Linz B, Register KB, Newman JD, Taylor DL, Boschert KR, Le Guyon S, Wilson EF, Brinkac LM, Sanka R, Greco SC, Klender PM, Losada L, Harvill ET	Int J Syst Evol Microbiol	10.1099/ijsem.0.001540	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25062	Y. V. L. Ivanov, B.,Register, K. B.,Newman, J. D.,Taylor, D. L.,Boschert, K. R.,Le Guyon, S.,Wilson, E. F.,Brinkac, L. M.,Sanka, R.,Greco, S. C.,Klender, P. M.,Losada, L.,Harvill, E. T.: Identification and taxonomic characterization of Bordetella pseudohinzii sp. nov. isolated from laboratory-raised mice. IJSEM 66: 5452 - 5459 2016 ( DOI 10.1099/ijsem.0.001540 , PubMed 27707434 )
#42857	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106160
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#121990	Collection of Institut Pasteur ; Curators of the CIP; CIP 111487
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bordetella pseudohinzii (DSM 106160, NCTC 13808, NRRL B-59942)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000657795

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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