Strain identifier

BacDive ID: 133299

Type strain: Yes

Species: Arsenicitalea aurantiaca

Strain Designation: 42-50

NCBI tax ID(s): 1783274 (species)

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General

@ref: 25061

BacDive-ID: 133299

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Arsenicitalea aurantiaca 42-50 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from high-arsenic sediment.

NCBI tax id

  • NCBI tax id: 1783274
  • Matching level: species

doi: 10.13145/bacdive133299.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Arsenicitalea
  • species: Arsenicitalea aurantiaca
  • full scientific name: Arsenicitalea aurantiaca Mu et al. 2016

@ref: 25061

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Hyphomicrobiaceae

genus: Arsenicitalea

species: Arsenicitalea aurantiaca

strain designation: 42-50

type strain: yes

Morphology

cell morphology

  • @ref: 25061
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 25061
  • colony color: orange
  • colony shape: circular
  • medium used: 0.1xTSB

Culture and growth conditions

culture medium

  • @ref: 25061
  • name: 0.1xTSB
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25061positivegrowth15.0-42.0
25061positiveoptimum37mesophilic

culture pH

  • @ref: 25061
  • ability: positive
  • type: growth
  • pH: 5.0-9.0
  • PH range: alkaliphile

Physiology and metabolism

tolerance

@refcompoundconcentration
25061Arsenate40.0 mM
25061Arsenite20.0 mM

oxygen tolerance

  • @ref: 25061
  • oxygen tolerance: aerobe

spore formation

  • @ref: 25061
  • spore formation: no

halophily

  • @ref: 25061
  • salt: NaCl
  • tested relation: resistant
  • concentration: 1.0-5.0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25061168082-dehydro-D-gluconate-assimilation
25061370543-hydroxybutyrate-assimilation
25061178794-hydroxybenzoate-assimilation
25061581435-dehydro-D-gluconate-assimilation
2506117128adipate-assimilation
25061casein-hydrolysis
2506127689decanoate-assimilation
2506128087glycogen-assimilation
2506117268myo-inositol-assimilation
2506116977L-alanine-assimilation
2506130849L-arabinose-assimilation
2506115971L-histidine-assimilation
2506117203L-proline-assimilation
2506162345L-rhamnose-assimilation
2506117115L-serine-assimilation
2506124996lactate-assimilation
2506117306maltose-assimilation
2506132032potassium gluconate-assimilation
2506117015riboflavin-hydrolysis
2506132954sodium acetate-assimilation
2506162983sodium malonate-assimilation
2506128017starch-hydrolysis
2506127897tryptophan-energy source
2506118186tyrosine-hydrolysis
2506117634D-glucose+assimilation
2506116899D-mannitol+assimilation
2506116024D-mannose+assimilation
2506116988D-ribose+assimilation
2506117924D-sorbitol+assimilation
2506118287L-fucose+assimilation
2506125115malate+assimilation
2506128053melibiose+assimilation
25061506227N-acetylglucosamine+assimilation
2506117632nitrate+reduction
2506117814salicin+assimilation
2506153258sodium citrate+assimilation

metabolite production

@refChebi-IDmetaboliteproduction
2506116136hydrogen sulfideno
2506135581indoleno

metabolite tests

  • @ref: 25061
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
25061alkaline phosphatase-3.1.3.1
25061alpha-chymotrypsin-3.4.21.1
25061alpha-fucosidase-3.2.1.51
25061alpha-galactosidase-3.2.1.22
25061alpha-glucosidase-3.2.1.20
25061alpha-mannosidase-3.2.1.24
25061arginine dihydrolase-3.5.3.6
25061beta-glucosidase+3.2.1.21
25061catalase+1.11.1.6
25061cystine arylamidase-3.4.11.3
25061cytochrome oxidase+1.9.3.1
25061esterase (C 4)+
25061esterase Lipase (C 8)+
25061gelatinase+
25061leucine arylamidase+3.4.11.1
25061lipase (C 14)-
25061lysine decarboxylase-4.1.1.18
25061N-acetyl-beta-glucosaminidase-3.2.1.52
25061naphthol-AS-BI-phosphohydrolase+
25061ornithine decarboxylase-4.1.1.17
25061trypsin+3.4.21.4
25061tryptophan deaminase-4.1.99.1
25061urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 25061
  • sample type: high-arsenic sediment
  • geographic location: Jianghan Plain, Hubei Province
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 30
  • longitude: 113
  • enrichment culture: 0.1xTSB agar
  • enrichment culture composition: with 5.0 mM As(V) (Na3AsO4.12H2O)
  • enrichment culture duration: 7 days
  • enrichment culture temperature: 30

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_84776.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2267;97_43361;98_56682;99_84776&stattab=map
  • Last taxonomy: Arsenicitalea aurantiaca subclade
  • 16S sequence: KT595938
  • Sequence Identity:
  • Total samples: 14
  • soil counts: 7
  • aquatic counts: 1
  • animal counts: 6

Sequence information

16S sequences

  • @ref: 25061
  • description: Hyphomicrobiaceae bacterium 42-50 16S ribosomal RNA gene, partial sequence
  • accession: KT595938
  • length: 1438
  • database: nuccore
  • NCBI tax ID: 1783274

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arsenicitalea aurantiaca 42-50GCA_003994485contigncbi1783274
66792Arsenicitalea aurantiaca 42-502837662100draftimg1783274

GC content

  • @ref: 25061
  • GC-content: 73.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 25061

culture collection no.: CCTCC AB 2014325, KCTC 42825

literature

  • topic: Phylogeny
  • Pubmed-ID: 27902179
  • title: Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment.
  • authors: Mu Y, Zhou L, Zeng XC, Liu L, Pan Y, Chen X, Wang J, Li S, Li WJ, Wang Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001543
  • year: 2016
  • mesh: *Arsenic, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Hyphomicrobiaceae/*classification/genetics/isolation & purification, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25061Y. Z. Mu, L.,Zeng, X. C.,Liu, L.,Pan, Y.,Chen, X.,Wang, J.,Li, S.,Li, W. J.,Wang, Y.Arsenicitalea aurantiaca gen. nov., sp. nov., a new member of the family Hyphomicrobiaceae, isolated from high-arsenic sediment10.1099/ijsem.0.001543IJSEM 66: 5478-5484 201627902179
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/