Name: Deinococcus persicinus KSY3-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133269

Type strain:

Species: Deinococcus persicinus

Strain Designation: KSY3-6

Culture col. no.: KCTC 33787, JCM 31313

Strain history: M. K. Kim; Dept. of Bio & Environ. Technol., Seoul Women's Univ., South Korea; KSY3-6.

NCBI tax ID(s): 1848199 (species)

Other strains from Deinococcus persicinus

D. persicinus JCM 31312, KCTC 33788

Section

Deinococcus persicinus KSY3-6 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil sample.

coccus-shaped
colony-forming
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus persicinus**
	Full Scientific Name (LPSN)	Deinococcus persicinus Jeon et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25099]	Gram stain	negative

[Ref.: #25099]	Cell length	1.5-2.0 µm

[Ref.: #25099]	Cell shape	coccus-shaped

[Ref.: #25099]	Motility	no

[Ref.: #25099]	Colony color	pink
[Ref.: #25099]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

TSA (Trypticase soy agar;Difco)

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Culture medium growth

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Culture medium

LB agar (lysogeny broth agar)

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Culture medium growth

		Temperature
[Ref.: #25099]	growth	30 °C
[Ref.: #25099]	optimum	25 °C
[Ref.: #25099]	growth	20 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #25099]	Temperature range	mesophilic
[Ref.: #25099]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #25099]		optimum	7
[Ref.: #25099]		growth	6.0-8.0
[Ref.: #25099]	no	growth	5
[Ref.: #25099]	no	growth	10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

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Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25099]	adipate ChEBI	-	assimilation
[Ref.: #25099]	butyrate ChEBI	-	assimilation
[Ref.: #25099]	citrate ChEBI	-	assimilation
[Ref.: #25099]	D-glucose ChEBI	-	assimilation
[Ref.: #25099]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #25099]	D-mannitol ChEBI	-	assimilation
[Ref.: #25099]	D-mannose ChEBI	-	assimilation
[Ref.: #25099]	dna ChEBI	+	hydrolysis
[Ref.: #25099]	gluconate ChEBI	-	assimilation
[Ref.: #25099]	glucose ChEBI	+	builds acid from
[Ref.: #25099]	glucuronamide ChEBI	+	carbon source
[Ref.: #25099]	L-arabinose ChEBI	-	assimilation
[Ref.: #25099]	L-malate ChEBI	-	assimilation
[Ref.: #25099]	maltose ChEBI	-	assimilation
[Ref.: #25099]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25099]	phenylacetate ChEBI	-	assimilation
[Ref.: #25099]	skimmed milk	+	hydrolysis
[Ref.: #25099]	starch ChEBI	+	hydrolysis
[Ref.: #25099]	tween 20 ChEBI	-	hydrolysis
[Ref.: #25099]	tween 40 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25099]	acid phosphatase	-	3.1.3.2
[Ref.: #25099]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25099]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25099]	alpha-fucosidase	+	3.2.1.51
[Ref.: #25099]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25099]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25099]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25099]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25099]	beta-galactosidase	-	3.2.1.23
[Ref.: #25099]	beta-glucosidase	-	3.2.1.21
[Ref.: #25099]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25099]	catalase	+	1.11.1.6
[Ref.: #25099]	cystine arylamidase	-	3.4.11.3
[Ref.: #25099]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25099]	esterase (C 4)	+
[Ref.: #25099]	esterase Lipase (C 8)	+
[Ref.: #25099]	gelatinase	-
[Ref.: #25099]	leucine arylamidase	+	3.4.11.1
[Ref.: #25099]	lipase (C 14)	+
[Ref.: #25099]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25099]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25099]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25099]	Sample type/isolated from	soil sample
[Ref.: #25099]	Geographic location (country and/or sea, region)	near a water stream in Seoul
[Ref.: #25099]	Country	Republic of Korea
[Ref.: #25099]	Country ISO 3 Code	KOR
[Ref.: #25099]	Continent	Asia
[Ref.: #25099]	Geographic location	37.0000°/127.0000°
[Ref.: #25099]	Enrichment culture	R2A agar (Reasoner's 2A agar, Difco)
[Ref.: #25099]	Enrichment culture duration	7 days
[Ref.: #25099]	Enrichment culture temperature	25 ̊C
[Ref.: #25099]	Isolation/enrichment procedure	irradiation with 3 kGy using a cobalt-60 gamma irradiator, dilution and then plating on R2A agar

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KU865687 (>99% sequence identity) for Deinococcus persicinus subclade from Microbeatlas

Aquatic Samples	183
Soil Samples	764
Animal Samples	342
Plant Samples	88
Total Samples	1377

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Deinococcus persicinus strain KSY3-6 16S ribosomal RNA gene, partial sequence	KU865687	1432	ENA	1848199 tax ID

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GC-content

62 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KCTC 33787, JCM 31313

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus persicinus sp. nov., a radiation-resistant bacterium from soil.	Jeon SH, Kang MS, Joo ES, Kim EB, Lim S, Jeong SW, Jung HY, Srinivasan S, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001473	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25099

S. H. K. Jeon, M. S.,Joo, E. S.,Kim, E. B.,Lim, S.,Jeong, S. W.,Jung, H. Y.,Srinivasan, S.,Kim, M. K.: Deinococcus persicinus sp. nov., a radiation-resistant bacterium from soil. IJSEM 66: 5077 - 5082 2016 ( DOI 10.1099/ijsem.0.001473 , PubMed 27624500 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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