Fervidobacterium thailandense (FC2004, JCM 18757, ATCC BAA-2483)

Name: Fervidobacterium thailandense (FC2004, JCM 18757, ATCC BAA-2483)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133268

Type strain

Strain Designation FC2004

Culture col. no. FC2004 JCM 18757 ATCC BAA-2483 ATCC AA-2483

NCBI tax ID(s) 1008305

Special Collections JCM Literature strains

History JCM <-- W. Kanoksilapatham; Silpakorn Univ., Thailand; FC2004.

Links

Fervidobacterium thailandense FC2004 is an obligate anaerobe, organotroph, rod-shaped bacterium that was isolated from sediment sample from a geothermal hot spring.

rod-shaped obligate anaerobe organotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132256

JCM 18757

@ref 20215

Last LPSN update 2026-05-29 08:38:03

Domain Bacteria

Phylum Thermotogota

Class Thermotogae

Order Thermotogales

Family Fervidobacteriaceae

Genus Fervidobacterium

Species Fervidobacterium thailandense

Full scientific name Fervidobacterium thailandense Kanoksilapatham et al. 2016

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape
25124	1.1-2.5 µm	0.5-0.6 µm	rod-shaped
25124	10.0-30.0 µm	0.5-0.6 µm	filament-shaped

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
25124	positive	growth	60.0-88.0
25124	positive	optimum	80
67770	positive	growth	80

Culture pH

@ref	Ability	Type	PH	PH range
25124	positive	optimum	7.5
25124	positive	growth	6.0-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25124	obligate anaerobe
125438	anaerobe	93.466

Nutrition type

25124

Typeorganotroph

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25124	NaCl	positive	growth	0.0-5.0 g/L
25124	NaCl		optimum	0.5 g/L

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25124	22599 ChEBI	arabinose	-	fermentation
25124	85146 ChEBI	carboxymethylcellulose	+	fermentation
25124	17057 ChEBI	cellobiose	+	fermentation
25124	62968 ChEBI	cellulose	-	fermentation
25124	33403 ChEBI	elemental sulfur	+	required for growth
25124	28757 ChEBI	fructose	+	fermentation
25124	28260 ChEBI	galactose	-	fermentation
25124	17234 ChEBI	glucose	+	fermentation
25124	17716 ChEBI	lactose	-	fermentation
25124	17306 ChEBI	maltose	+	fermentation
25124	29864 ChEBI	mannitol	-	fermentation
25124	37684 ChEBI	mannose	-	fermentation
25124	17632 ChEBI	nitrate	-	required for growth
25124	30911 ChEBI	sorbitol	-	fermentation
25124	28017 ChEBI	starch	+	fermentation
25124	17992 ChEBI	sucrose	+	fermentation
25124	16094 ChEBI	thiosulfate	-	required for growth
25124	27082 ChEBI	trehalose	-	fermentation
25124	18222 ChEBI	xylose	-	fermentation

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture temperature
25124	sediment sample from a geothermal hot spring	Mae Fang National Park	Thailand	THA	Asia	19	99 19/99	480G medium	containing (per litre): NaCl (0.5 g), NH4Cl (0.33 g), CaCl2.2H2O (0.15 g), MgCl2 .6H2O (0.35 g), KCl (0.3 g), KH2PO4 (0.3 g), pancreatic digestion of casein (1 g; Criterion), yeast extract (0.5 g; Criterion), A5 solution (1 ml), resazurin solution (0.5 ml of a 0.2 g l-1 solution) and 3 ml Na2S.9H2O solution [25 % (w/v), pH 7]	80
67770	Hot spring in northern Thailand

Taxonmaps

69479

Global distribution of 16S sequence KJ473436 (>99% sequence identity) for Fervidobacterium thailandense subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	6
Animal Samples	1
Plant Samples	0
Total Samples	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	Fervidobacterium_thailandense_FC2004 assembly for Fervidobacterium thailandense FC2004	complete	GCA_041505935			1008305	96.95
67770	ASM171906v1 assembly for Fervidobacterium thailandense FC2004	contig	GCA_001719065	1008305.3	2881251750	1008305	67.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25124	Fervidobacterium thailandense strain FC2004 16S ribosomal RNA gene, partial sequence	KJ473436	1339		1008305

GC content

@ref	GC-content (mol%)	Method
25124	45.8	thermal denaturation, midpoint method (Tm)
67770	45.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fervidobacterium_thailandense_FC2004 assembly for Fervidobacterium thailandense FC2004
NCBI: GCA_041505935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	81.80	no
125439	gram_stain	BacteriaNetⓘ	variable	71.11	no
125439	motility	BacteriaNetⓘ	no	59.79	no
125439	spore_formation	BacteriaNetⓘ	yes	35.68	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fervidobacterium thailandensis strain FC2004
PATRIC: 1008305.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	55.78	no
125438	anaerobic	anaerobicⓘ	yes	93.47	no
125438	spore-forming	spore-formingⓘ	no	75.04	no
125438	aerobic	aerobicⓘ	no	98.08	yes
125438	thermophilic	thermophileⓘ	yes	80.97	yes
125438	flagellated	motile2+ⓘ	yes	59.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fervidobacterium thailandense sp. nov., an extremely thermophilic bacterium isolated from a hot spring.	Kanoksilapatham W, Pasomsup P, Keawram P, Cuecas A, Portillo MC, Gonzalez JM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001463	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25124	W. P. Kanoksilapatham, P.,Keawram, P.,Cuecas, A.,Portillo, M. C.,Gonzalez, J. M.: Fervidobacterium thailandense sp. nov., an extremely thermophilic bacterium isolated from a hot spring. IJSEM 66: 5023 - 5027 2016 ( DOI 10.1099/ijsem.0.001463 , PubMed 27566409 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fervidobacterium thailandense (FC2004, JCM 18757, ATCC BAA-2483)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_041505935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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