Name: Fervidobacterium thailandense FC2004
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133268

Type strain:

Species: Fervidobacterium thailandense

Strain Designation: FC2004

Culture col. no.: JCM 18757, ATCC BAA-2483, ATCC AA-2483

Strain history: W. Kanoksilapatham; Silpakorn Univ., Thailand; FC2004.

NCBI tax ID(s): 1008305 (species)

Section

Fervidobacterium thailandense FC2004 is an obligate anaerobe, organotroph, hyperthermophilic bacterium that was isolated from sediment sample from a geothermal hot spring.

rod-shaped
hyperthermophilic
obligate anaerobe
organotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Fervidobacteriaceae*
	Genus	*Fervidobacterium*
	Species	**Fervidobacterium thailandense**
	Full Scientific Name (LPSN)	Fervidobacterium thailandense Kanoksilapatham et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.878

[Ref.: #25124]	Cell length	1.1-2.5 µm
[Ref.: #25124]	Cell length	10.0-30.0 µm

[Ref.: #25124]	Cell width	0.5-0.6 µm
[Ref.: #25124]	Cell width	0.5-0.6 µm

[Ref.: #25124]	Cell shape	rod-shaped
[Ref.: #25124]	Cell shape	filament-shaped

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #25124]	growth	60.0-88.0 °C
[Ref.: #25124]	optimum	80 °C
[Ref.: #67770]	growth	80 °C

[Ref.: #25124]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

	pH	Kind of pH		pH
[Ref.: #25124]			optimum	7.5
[Ref.: #25124]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25124]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #25124]

Nutrition type

organotroph

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.461

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25124]		NaCl		growth	0.0-5.0	g/L
[Ref.: #25124]		NaCl		optimum	0.5	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25124]	arabinose ChEBI	-	fermentation
[Ref.: #25124]	carboxymethylcellulose ChEBI	+	fermentation
[Ref.: #25124]	cellobiose ChEBI	+	fermentation
[Ref.: #25124]	cellulose ChEBI	-	fermentation
[Ref.: #25124]	elemental sulfur ChEBI	+	required for growth
[Ref.: #25124]	fructose ChEBI	+	fermentation
[Ref.: #25124]	galactose ChEBI	-	fermentation
[Ref.: #25124]	glucose ChEBI	+	fermentation
[Ref.: #25124]	lactose ChEBI	-	fermentation
[Ref.: #25124]	maltose ChEBI	+	fermentation
[Ref.: #25124]	mannitol ChEBI	-	fermentation
[Ref.: #25124]	mannose ChEBI	-	fermentation
[Ref.: #25124]	nitrate ChEBI	-	required for growth
[Ref.: #25124]	sorbitol ChEBI	-	fermentation
[Ref.: #25124]	starch ChEBI	+	fermentation
[Ref.: #25124]	sucrose ChEBI	+	fermentation
[Ref.: #25124]	thiosulfate ChEBI	-	required for growth
[Ref.: #25124]	trehalose ChEBI	-	fermentation
[Ref.: #25124]	xylose ChEBI	-	fermentation
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25124]	Sample type/isolated from	sediment sample from a geothermal hot spring
[Ref.: #25124]	Geographic location (country and/or sea, region)	Mae Fang National Park
[Ref.: #25124]	Country	Thailand
[Ref.: #25124]	Country ISO 3 Code	THA
[Ref.: #25124]	Continent	Asia
[Ref.: #25124]	Geographic location	19.0000°/99.0000°
[Ref.: #25124]	Enrichment culture	480G medium
[Ref.: #25124]	Enrichment culture composition	containing (per litre): NaCl (0.5 g), NH4Cl (0.33 g), CaCl2.2H2O (0.15 g), MgCl2 .6H2O (0.35 g), KCl (0.3 g), KH2PO4 (0.3 g), pancreatic digestion of casein (1 g; Criterion), yeast extract (0.5 g; Criterion), A5 solution (1 ml), resazurin solution (0.5 ml of a 0.2 g l-1 solution) and 3 ml Na2S.9H2O solution [25 % (w/v), pH 7]
[Ref.: #25124]	Enrichment culture temperature	80 ̊C

[Ref.: #67770]	Sample type/isolated from	Hot spring in northern Thailand
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ473436 (>99% sequence identity) for Fervidobacterium thailandense subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	6
Animal Samples	1
Plant Samples
Total Samples	30

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25124]	Fervidobacterium sp. FC2004 16S ribosomal RNA gene, partial sequence	KJ473436	1339	GenBank	1008305 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fervidobacterium thailandense FC2004	GCA_001719065	contig	GenBank	1008305 tax ID
[Ref.: #66792]	Fervidobacterium thailandensis strain FC2004	1008305.3	wgs	PATRIC	1008305 tax ID	*
[Ref.: #66792]	Fervidobacterium thailandense FC2004	2881251750	draft	JGI IMG/M	1008305 tax ID	*

[Ref.: #25124]	GC-content	45.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	45.8 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fervidobacterium thailandensis strain FC2004 PATRIC: 1008305.3
[Ref.: #69481]	spore-forming	no	70	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fervidobacterium thailandensis strain FC2004 PATRIC: 1008305.3
[Ref.: #69480]	motile	yes	89.211	no
[Ref.: #69480]	flagellated	no	87.685	no
[Ref.: #69480]	gram-positive	no	92.853	no
[Ref.: #69480]	anaerobic	yes	99.532	yes
[Ref.: #69480]	aerobic	no	98.788	yes
[Ref.: #69480]	halophile	no	90.364	no
[Ref.: #69480]	spore-forming	no	90.296	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	89.781	no
[Ref.: #69480]	glucose-ferment	yes	66.307	yes

Availability in culture collections External links

[Ref.: #25124]

Culture collection no.

JCM 18757, ATCC BAA-2483, ATCC AA-2483

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fervidobacterium thailandense sp. nov., an extremely thermophilic bacterium isolated from a hot spring.	Kanoksilapatham W, Pasomsup P, Keawram P, Cuecas A, Portillo MC, Gonzalez JM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001463	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25124

W. P. Kanoksilapatham, P.,Keawram, P.,Cuecas, A.,Portillo, M. C.,Gonzalez, J. M.: Fervidobacterium thailandense sp. nov., an extremely thermophilic bacterium isolated from a hot spring. IJSEM 66: 5023 - 5027 2016 ( DOI 10.1099/ijsem.0.001463 , PubMed 27566409 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Fervidobacterium thailandensis strain FC2004

Fervidobacterium thailandensis strain FC2004

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