Haloparvum alkalitolerans (MK62-1, JCM 30442, KCTC 4214)

Name: Haloparvum alkalitolerans (MK62-1, JCM 30442, KCTC 4214)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133245

Type strain

Strain Designation MK62-1

Culture col. no. MK62-1 JCM 30442 KCTC 4214

NCBI tax ID(s) 1042953

Special Collections JCM KCTC Literature strains

History Y. Kondo and H. Minegishi; Toyo Univ., Japan; MK62-1. <- Yusuke Kondo, Toyo Univ., Japan

Links

Haloparvum alkalitolerans MK62-1 is an aerobe, Gram-negative, rod-shaped prokaryote that has a red pigmentation and was isolated from commercial salt made from seawater.

Gram-negative rod-shaped pigmented aerobe 16S sequence

Name and taxonomic classification

SI-ID 27651

KCTC 4214,JCM 30442

@ref 20215

Last LPSN update 2026-02-09 11:31:54

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloparvum

Species Haloparvum alkalitolerans

Full scientific name Haloparvum alkalitolerans Kondo et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Cell length	Cell width
25083	negative	rod-shaped
25083		pleomorphic-shaped	0.5-1.2 µm	0.3-0.6 µm
67771		rod-shaped
67771		pleomorphic-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color
25083	<2.0 mm	red

Pigmentation

@ref	Production	Color
25083		red

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25083	positive	growth	20-55
25083	positive	optimum	45-50	thermophilic
67770	positive	growth	42	thermophilic
67771	positive	growth	42	thermophilic

Culture pH

@ref	Ability	Type	PH	PH range
25083	positive	optimum	7.0-7.5
25083	positive	growth	6.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25083	NaCl	positive	growth	2.1-4.7 M
25083	NaCl		optimum	2.1-2.6 M

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25083	30916 ChEBI	2-oxoglutarate	-	carbon source
25083	17057 ChEBI	cellobiose	+	carbon source
25083	15824 ChEBI	D-fructose	+	carbon source
25083	12936 ChEBI	D-galactose	-	carbon source
25083	17634 ChEBI	D-glucose	+	carbon source
25083	16899 ChEBI	D-mannitol	-	carbon source
25083	16024 ChEBI	D-mannose	+	carbon source
25083	17924 ChEBI	D-sorbitol	-	carbon source
25083	65327 ChEBI	D-xylose	-	carbon source
25083	115156 ChEBI	disodium fumarate	-	carbon source
25083	91260 ChEBI	disodium malate	-	carbon source
25083	5291 ChEBI	gelatin	-	hydrolysis
25083	17754 ChEBI	glycerol	+	carbon source
25083	15428 ChEBI	glycine	-	carbon source
25083	16977 ChEBI	L-alanine	+	carbon source
25083	30849 ChEBI	L-arabinose	-	carbon source
25083	29991 ChEBI	L-aspartate	-	carbon source
25083	18019 ChEBI	L-lysine	-	carbon source
25083	62345 ChEBI	L-rhamnose	-	carbon source
25083	17266 ChEBI	L-sorbose	-	carbon source
25083	17716 ChEBI	lactose	-	carbon source
25083	18420 ChEBI	magnesium(2+)	+	required for growth
25083	17306 ChEBI	maltose	+	carbon source
25083	17632 ChEBI	nitrate	+	reduction
25083	16634 ChEBI	raffinose	-	carbon source
25083	15963 ChEBI	ribitol	-	carbon source
25083	33942 ChEBI	ribose	-	carbon source
25083	32954 ChEBI	sodium acetate	+	carbon source
25083	53258 ChEBI	sodium citrate	-	carbon source
25083	64243 ChEBI	sodium L-glutamate	+	carbon source
25083	75228 ChEBI	sodium lactate	+	carbon source
25083	132106 ChEBI	sodium propionate	-	carbon source
25083	50144 ChEBI	sodium pyruvate	+	carbon source
25083	63675 ChEBI	sodium succinate	+	carbon source
25083	28017 ChEBI	starch	+	hydrolysis
25083	17992 ChEBI	sucrose	+	carbon source
25083	27082 ChEBI	trehalose	+	carbon source
25083	27897 ChEBI	tryptophan	-	energy source
25083	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Resistance conc.	Sensitivity conc.
25083	28971		ampicillin	10 µg (disc)
25083	161680		aztreonam	30 µg (disc)
25083	28669		bacitracin		10 µg (disc)
25083	3393		carbenicillin	100 µg (disc)
25083	124991		cefalotin	30 µg (disc)
25083	209807		cefoxitin	30 µg (disc)
25083	17698		chloramphenicol	30 µg (disc)
25083	3745		clindamycin	2 µg (disc)
25083	48923		erythromycin	15 µg (disc)
25083	17833		gentamicin	120 µg (disc)
25083	6104		kanamycin	30 µg (disc)
25083	63607		linezolid		30 µg (disc)
25083	43968		meropenem	10 µg (disc)
25083	100147		nalidixic acid	30 µg (disc)
25083	7507		neomycin	30 µg (disc)
25083	28368		novobiocin		30 µg (disc)
25083	18208		penicillin g	10 Unit (disc)
25083	8232	16	piperacillin	110 µg (disc)
25083	8309		polymyxin b		300 µg (disc)
25083	28077		rifampicin		5 µg (disc)
25083	17076		streptomycin	300 µg (disc)
25083	102484		sulfisoxazole	250 µg (disc)
25083	9421	16	tazobactam	110 µg (disc)
25083	27902		tetracycline	30 µg (disc)
25083	28001		vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25083	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25083	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25083	catalase	+	1.11.1.6
25083	cytochrome oxidase	-	1.9.3.1
25083	tryptophan deaminase	-	4.1.99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Enrichment culture
25083	commercial salt made from seawater	Philippines	PHL	Asia	agar plate of MH4.2 medium
67770	Commercial salt made from seawater in the Philippines
67771	From commercial salt made from seawater in Philippines and sold in Japan	Philippines	PHL	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB638839 (>99% sequence identity) for Haloparvum from Microbeatlas

Aquatic Samples	9
Soil Samples	5
Animal Samples
Plant Samples
Total Samples	14

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
25083	Halophilic archaeon MK62-1 gene for 16S ribosomal RNA, partial sequence	AB638839

GC content

@ref	GC-content (mol%)	Method
67771	70.1
67770	70.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Halobacteria and Subcommittee on the taxonomy of Halomonadaceae. Minutes of the joint open meeting, 11 July 2017, Valencia, Spain.	Arahal DR, Oren A, Ventosa A.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002296	2017
Phylogeny	Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt.	Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Tanaka A, Takahashi-Ando N, Fukushima Y, Yoshida Y, Ihara K, Usami R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001513	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25083	Y. M. Kondo, H.,Echigo, A.,Shimane, Y.,Kamekura, M.,Itoh, T.,Ohkuma, M.,Tanaka, A.,Takahashi-Ando, N.,Fukushima, Y.,Yoshida, Y.,Ihara, K.,Usami, R.: Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt. IJSEM 66: 5314 - 5319 2016 ( DOI 10.1099/ijsem.0.001513 , PubMed 27666573 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloparvum alkalitolerans (MK62-1, JCM 30442, KCTC 4214)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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