Name: Haloparvum alkalitolerans MK62-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133245

Type strain:

Species: Haloparvum alkalitolerans

Strain Designation: MK62-1

Culture col. no.: JCM 30442, KCTC 4214

Strain history: <- Yusuke Kondo, Toyo Univ., Japan

NCBI tax ID(s): 1042953 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Haloparvum alkalitolerans MK62-1 is an aerobe, Gram-negative, rod-shaped archaeon that has a red pigmentation and was isolated from commercial salt made from seawater.

Gram-negative
pigmented
rod-shaped
aerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloferacaceae*
	Genus	*Haloparvum*
	Species	**Haloparvum alkalitolerans**
	Full Scientific Name (LPSN)	Haloparvum alkalitolerans Kondo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25083]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #25083]	Cell shape	rod-shaped
[Ref.: #25083]	Cell shape	pleomorphic-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	pleomorphic-shaped

[Ref.: #25083]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #25083]	Cell length	0.5-1.2 µm

[Ref.: #25083]	Cell width	0.3-0.6 µm

[Ref.: #25083]	Colony size	<2.0 mm
[Ref.: #25083]	Colony color	red

[Ref.: #25083]	Pigment production	yes
[Ref.: #25083]	Pigmentation color	red

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #25083]	growth	20-55 °C
[Ref.: #25083]	optimum	45-50 °C
[Ref.: #67770]	growth	42 °C
[Ref.: #67771]	growth	42 °C

	pH	Kind of pH		pH
[Ref.: #25083]			optimum	7.0-7.5
[Ref.: #25083]			growth	6.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25083]		NaCl		growth	2.1-4.7	M
[Ref.: #25083]		NaCl		optimum	2.1-2.6	M

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25083]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #25083]	cellobiose ChEBI	+	carbon source
[Ref.: #25083]	D-fructose ChEBI	+	carbon source
[Ref.: #25083]	D-galactose ChEBI	-	carbon source
[Ref.: #25083]	D-glucose ChEBI	+	carbon source
[Ref.: #25083]	D-mannitol ChEBI	-	carbon source
[Ref.: #25083]	D-mannose ChEBI	+	carbon source
[Ref.: #25083]	D-sorbitol ChEBI	-	carbon source
[Ref.: #25083]	D-xylose ChEBI	-	carbon source
[Ref.: #25083]	disodium fumarate ChEBI	-	carbon source
[Ref.: #25083]	disodium malate ChEBI	-	carbon source
[Ref.: #25083]	gelatin ChEBI	-	hydrolysis
[Ref.: #25083]	glycerol ChEBI	+	carbon source
[Ref.: #25083]	glycine ChEBI	-	carbon source
[Ref.: #25083]	L-alanine ChEBI	+	carbon source
[Ref.: #25083]	L-arabinose ChEBI	-	carbon source
[Ref.: #25083]	L-aspartate ChEBI	-	carbon source
[Ref.: #25083]	L-lysine ChEBI	-	carbon source
[Ref.: #25083]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25083]	L-sorbose ChEBI	-	carbon source
[Ref.: #25083]	lactose ChEBI	-	carbon source
[Ref.: #25083]	magnesium(2+) ChEBI	+	required for growth
[Ref.: #25083]	maltose ChEBI	+	carbon source
[Ref.: #25083]	nitrate ChEBI	+	reduction
[Ref.: #25083]	raffinose ChEBI	-	carbon source
[Ref.: #25083]	ribitol ChEBI	-	carbon source
[Ref.: #25083]	ribose ChEBI	-	carbon source
[Ref.: #25083]	sodium acetate ChEBI	+	carbon source
[Ref.: #25083]	sodium citrate ChEBI	-	carbon source
[Ref.: #25083]	sodium L-glutamate ChEBI	+	carbon source
[Ref.: #25083]	sodium lactate ChEBI	+	carbon source
[Ref.: #25083]	sodium propionate ChEBI	-	carbon source
[Ref.: #25083]	sodium pyruvate ChEBI	+	carbon source
[Ref.: #25083]	sodium succinate ChEBI	+	carbon source
[Ref.: #25083]	starch ChEBI	+	hydrolysis
[Ref.: #25083]	sucrose ChEBI	+	carbon source
[Ref.: #25083]	trehalose ChEBI	+	carbon source
[Ref.: #25083]	tryptophan ChEBI	-	energy source
[Ref.: #25083]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25083]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #25083]	aztreonam ChEBI				yes	30	µg (disc)
[Ref.: #25083]	bacitracin ChEBI	yes	10	µg (disc)
[Ref.: #25083]	carbenicillin ChEBI				yes	100	µg (disc)
[Ref.: #25083]	cefalotin ChEBI				yes	30	µg (disc)
[Ref.: #25083]	cefoxitin ChEBI				yes	30	µg (disc)
[Ref.: #25083]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #25083]	clindamycin ChEBI				yes	2	µg (disc)
[Ref.: #25083]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #25083]	gentamicin ChEBI				yes	120	µg (disc)
[Ref.: #25083]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #25083]	linezolid ChEBI	yes	30	µg (disc)
[Ref.: #25083]	meropenem ChEBI				yes	10	µg (disc)
[Ref.: #25083]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #25083]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #25083]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #25083]	penicillin g ChEBI				yes	10	Unit (disc)
[Ref.: #25083]	polymyxin b ChEBI	yes	300	µg (disc)
[Ref.: #25083]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #25083]	streptomycin ChEBI				yes	300	µg (disc)
[Ref.: #25083]	sulfisoxazole ChEBI				yes	250	µg (disc)
[Ref.: #25083]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #25083]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic resistance	Concentration
[Ref.: #25083]		16	piperacillin ChEBI	yes	110	µg (disc)
[Ref.: #25083]		16	tazobactam ChEBI	yes	110	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #25083]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25083]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25083]	catalase	+	1.11.1.6
[Ref.: #25083]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25083]	tryptophan deaminase	-	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25083]	Sample type/isolated from	commercial salt made from seawater
[Ref.: #25083]	Country	Philippines
[Ref.: #25083]	Country ISO 3 Code	PHL
[Ref.: #25083]	Continent	Asia
[Ref.: #25083]	Enrichment culture	agar plate of MH4.2 medium

[Ref.: #67770]	Sample type/isolated from	Commercial salt made from seawater in the Philippines

[Ref.: #67771]	Sample type/isolated from	From commercial salt made from seawater in Philippines and sold in Japan
[Ref.: #67771]	Country	Philippines
[Ref.: #67771]	Country ISO 3 Code	PHL
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB638839 (>99% sequence identity) for Haloparvum from Microbeatlas

Aquatic Samples	9
Soil Samples	5
Animal Samples
Plant Samples
Total Samples	14

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25083]	Halophilic archaeon MK62-1 gene for 16S ribosomal RNA, partial sequence	AB638839		GenBank ENA

[Ref.: #67771]	GC-content	70.1 mol%
[Ref.: #67770]	GC-content	70.1 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25083]

Culture collection no.

JCM 30442, KCTC 4214

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt.	Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Tanaka A, Takahashi-Ando N, Fukushima Y, Yoshida Y, Ihara K, Usami R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001513	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25083

Y. M. Kondo, H.,Echigo, A.,Shimane, Y.,Kamekura, M.,Itoh, T.,Ohkuma, M.,Tanaka, A.,Takahashi-Ando, N.,Fukushima, Y.,Yoshida, Y.,Ihara, K.,Usami, R.: Haloparvum alkalitolerans sp. nov., alkali-tolerant haloarchaeon isolated from commercial salt. IJSEM 66: 5314 - 5319 2016 ( DOI 10.1099/ijsem.0.001513 , PubMed 27666573 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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