Chromobacterium rhizoryzae (LAM 1188, ACCC 19900, JCM 31180)

Name: Chromobacterium rhizoryzae (LAM 1188, ACCC 19900, JCM 31180)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133161

Type strain

Culture col. no. LAM 1188 ACCC 19900 JCM 31180

NCBI tax ID(s) 1778675

Special Collections JCM Literature strains

History Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM1188.

Links

Chromobacterium rhizoryzae LAM 1188 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from roots of rice .

Gram-negative motile rod-shaped facultative anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 393887

JCM 31180

@ref 20215

Last LPSN update 2026-02-09 11:31:53

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Chromobacteriaceae

Genus Chromobacterium

Species Chromobacterium rhizoryzae

Full scientific name Chromobacterium rhizoryzae Zhou et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
24936	negative	1.6-2.2 µm	0.4-0.5 µm	rod-shaped		monotrichous, polar

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony color	Incubation period	Medium used
24936	alpha/beta	1	tan	1 day	TSA (Trypticase soy agar)

Culture and growth conditions

Culture medium

@ref	Name	Growth
24936	TSA medium (Trypticase soy agar)
24936	MacConkey agar
24936	Reasoner's 2A agar (R2A)
24936	NA (Nutrient Agar)

Culture temp

@ref	Growth	Type	Temperature (°C)
24936	positive	growth	15.0-40.0
24936	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
24936	positive	optimum	7
24936	positive	growth	5.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

24936

Oxygen tolerancefacultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
24936	NaCl		growth	>3.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24936	17521 ChEBI	(-)-quinic acid	-	carbon source
24936	62064 ChEBI	2,3-butanediol	-	carbon source
24936	64552 ChEBI	2-hydroxybutyrate	-	carbon source
24936	16763 ChEBI	2-oxobutanoate	+	carbon source
24936	30916 ChEBI	2-oxoglutarate	+	carbon source
24936	28644 ChEBI	2-oxopentanoate	+	carbon source
24936	37054 ChEBI	3-hydroxybutyrate	+	carbon source
24936	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
24936	16724 ChEBI	4-hydroxybutyrate	-	carbon source
24936	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
24936	30089 ChEBI	acetate	+	carbon source
24936	17128 ChEBI	adipate	+	carbon source
24936	40585 ChEBI	alpha-cyclodextrin	-	carbon source
24936	17925 ChEBI	alpha-D-glucose	+	carbon source
24936	36219 ChEBI	alpha-lactose	-	carbon source
24936	27613 ChEBI	amygdalin	-	carbon source
24936	73706 ChEBI	bromosuccinate	+	carbon source
24936	17126 ChEBI	carnitine	-	carbon source
24936	17057 ChEBI	cellobiose	-	carbon source
24936	16383 ChEBI	cis-aconitate	+	carbon source
24936	16947 ChEBI	citrate	+	carbon source
24936	15570 ChEBI	D-alanine	+	carbon source
24936	18333 ChEBI	D-arabitol	+	carbon source
24936	15824 ChEBI	D-fructose	+	carbon source
24936	15895 ChEBI	D-galactonic acid lactone	-	carbon source
24936	12936 ChEBI	D-galactose	-	carbon source
24936	18024 ChEBI	D-galacturonic acid	-	carbon source
24936	8391 ChEBI	D-gluconate	+	carbon source
24936	17784 ChEBI	D-glucosaminic acid	-	carbon source
24936	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
24936	15748 ChEBI	D-glucuronate	-	carbon source
24936	16899 ChEBI	D-mannitol	+	carbon source
24936	16024 ChEBI	D-mannose	+	carbon source
24936	27605 ChEBI	D-psicose	+	carbon source
24936	16523 ChEBI	D-serine	+	carbon source
24936	17924 ChEBI	D-sorbitol	-	carbon source
24936	16551 ChEBI	D-trehalose	+	carbon source
24936	27689 ChEBI	decanoate	+	carbon source
24936	23652 ChEBI	dextrin	+	carbon source
24936	17113 ChEBI	erythritol	-	carbon source
24936	16000 ChEBI	ethanolamine	-	carbon source
24936	15740 ChEBI	formate	+	carbon source
24936	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
24936	28066 ChEBI	gentiobiose	-	carbon source
24936	29042 ChEBI	glucose 1-phosphate	+	carbon source
24936	32323 ChEBI	glucuronamide	-	carbon source
24936	17754 ChEBI	glycerol	+	carbon source
24936	14336 ChEBI	glycerol 1-phosphate	+	carbon source
24936	28087 ChEBI	glycogen	+	carbon source
24936	73784 ChEBI	glycyl-l-glutamate	+	carbon source
24936	17596 ChEBI	inosine	+	carbon source
24936	17240 ChEBI	itaconate	-	carbon source
24936	21217 ChEBI	L-alaninamide	+	carbon source
24936	16977 ChEBI	L-alanine	+	carbon source
24936	73786 ChEBI	L-alanylglycine	+	carbon source
24936	30849 ChEBI	L-arabinose	+	carbon source
24936	17196 ChEBI	L-asparagine	+	carbon source
24936	29991 ChEBI	L-aspartate	+	carbon source
24936	18287 ChEBI	L-fucose	-	carbon source
24936	29985 ChEBI	L-glutamate	+	carbon source
24936	15971 ChEBI	L-histidine	+	carbon source
24936	15603 ChEBI	L-leucine	+	carbon source
24936	15729 ChEBI	L-ornithine	+	carbon source
24936	17295 ChEBI	L-phenylalanine	+	carbon source
24936	17203 ChEBI	L-proline	+	carbon source
24936	18183 ChEBI	L-pyroglutamic acid	+	carbon source
24936	62345 ChEBI	L-rhamnose	-	carbon source
24936	17115 ChEBI	L-serine	+	carbon source
24936	16857 ChEBI	L-threonine	+	carbon source
24936	24996 ChEBI	lactate	+	carbon source
24936	6359 ChEBI	lactulose	-	carbon source
24936	25115 ChEBI	malate	+	carbon source
24936	15792 ChEBI	malonate	-	carbon source
24936	17306 ChEBI	maltose	+	carbon source
24936	28053 ChEBI	melibiose	-	carbon source
24936	37657 ChEBI	methyl D-glucoside	-	carbon source
24936	51850 ChEBI	methyl pyruvate	+	carbon source
24936	75146 ChEBI	monomethyl succinate	+	carbon source
24936	17268 ChEBI	myo-inositol	+	carbon source
24936	28037 ChEBI	N-acetylgalactosamine	+	carbon source
24936	506227 ChEBI	N-acetylglucosamine	+	carbon source
24936	17632 ChEBI	nitrate	+	reduction
24936	18401 ChEBI	phenylacetate	+	carbon source
24936	50048 ChEBI	phenylethylamine	-	carbon source
24936	32032 ChEBI	potassium gluconate	+	carbon source
24936	17272 ChEBI	propionate	+	carbon source
24936	17148 ChEBI	putrescine	+	carbon source
24936	16634 ChEBI	raffinose	-	carbon source
24936	15963 ChEBI	ribitol	-	carbon source
24936	41865 ChEBI	sebacic acid	-	carbon source
24936	53258 ChEBI	sodium citrate	+	carbon source
24936	143136 ChEBI	succinamate	-	carbon source
24936	17992 ChEBI	sucrose	-	carbon source
24936	17748 ChEBI	thymidine	+	carbon source
24936	32528 ChEBI	turanose	-	carbon source
24936	53423 ChEBI	tween 40	+	carbon source
24936	53426 ChEBI	tween 80	+	carbon source
24936	16704 ChEBI	uridine	+	carbon source
24936	27248 ChEBI	urocanic acid	+	carbon source
24936	17151 ChEBI	xylitol	-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
24936	28971	ampicillin	10 µg/mL
24936	3393	carbenicillin	10 µg/mL
24936	17698	chloramphenicol		10 µg/mL
24936	3745	clindamycin		20 µg/mL
24936	3770	co-trimoxazole	10 µg/mL
24936	48923	erythromycin		20 µg/mL
24936	71321	fusidate	10 µg/mL
24936	17833	gentamicin		10 µg/mL
24936	6104	kanamycin		10 µg/mL
24936	63598	levofloxacin		20 µg/mL
24936	50694	minocycline		10 µg/mL
24936	7507	neomycin		10 µg/mL
24936	71415	nitrofurantoin		10 µg/mL
24936	8309	polymyxin b		10 µg/mL
24936	28077	rifampicin	10 µg/mL
24936	17076	streptomycin		10 µg/mL
24936	29687	teicoplanin	20 µg/mL
24936	27902	tetracycline		50 µg/mL
24936	28001	vancomycin	50 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite
24936	15688 ChEBI	acetoin
24936	16136 ChEBI	hydrogen sulfide
24936	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
24936	acid phosphatase	+	3.1.3.2
24936	alkaline phosphatase	+	3.1.3.1
24936	alpha-chymotrypsin	+	3.4.21.1
24936	alpha-fucosidase	-	3.2.1.51
24936	alpha-galactosidase	-	3.2.1.22
24936	alpha-glucosidase	-	3.2.1.20
24936	alpha-mannosidase	-	3.2.1.24
24936	arginine dihydrolase	+	3.5.3.6
24936	beta-galactosidase	-	3.2.1.23
24936	beta-glucosidase	-	3.2.1.21
24936	beta-glucuronidase	-	3.2.1.31
24936	catalase	+	1.11.1.6
24936	cystine arylamidase	-	3.4.11.3
24936	cytochrome oxidase	-	1.9.3.1
24936	esterase (C 4)	+
24936	esterase lipase (C 8)	+
24936	gelatinase	+
24936	lecithinase	+
24936	lipase	+
24936	lipase (C 14)	+
24936	lysine decarboxylase	-	4.1.1.18
24936	N-acetyl-beta-glucosaminidase	+	3.2.1.52
24936	naphthol-AS-BI-phosphohydrolase	+
24936	trypsin	-	3.4.21.4
24936	tryptophan deaminase	-	4.1.99.1
24936	urease	-	3.5.1.5
24936	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Host species
24936	roots of rice (Oryzasativa)	Experimental Demonstration Base at Huazhong Agricultural University, Wuhan city, Hubei Province	Republic of China	CHN	Asia	tryptic soy agar (TSA) plates (BD/Difco 236950)	1 day	30
67770	Roots of rice (Oryzasativa) in Hubei Province		China	CHN	Asia				Oryzasativa

Taxonmaps

69479

Global distribution of 16S sequence KT951843 (>99% sequence identity) for Chromobacterium from Microbeatlas

Aquatic Samples	186
Soil Samples	31
Animal Samples	44
Plant Samples	51
Total Samples	312

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24936	Chromobacterium rhizoryzae strain LAM1188 16S ribosomal RNA gene, partial sequence	KT951843	1445		1778675

GC content

@ref	GC-content (mol%)	Method
24936	64.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chromobacterium rhizoryzae sp. nov., isolated from rice roots.	Zhou S, Guo X, Wang H, Kong D, Wang Y, Zhu J, Dong W, He M, Hu G, Zhao B, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001284	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24936	S. G. Zhou, Xiang,Wang, Huimin,Kong, Delong,Wang, Yanwei,Zhu, Jie,Dong, Weiwei,He, Mingxiong,Hu, Guoquan,Zhao, Bingqiang,Zhao, Bin,Ruan, Zhiyong: Chromobacterium rhizoryzae sp. nov., isolated from rice roots. IJSEM 66: 3890 - 3896 2016 ( DOI 10.1099/ijsem.0.001284 , PubMed 27393690 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chromobacterium rhizoryzae (LAM 1188, ACCC 19900, JCM 31180)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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